Table 1.

Number of Unique Tags in SAGE Libraries of LY2186 Super-Hybrid Rice Combination.

Copy numbera	SE21s		LY2186		MH86		Combination
	Numberc	%d	Number	%	Number	%	Number	%
>100	52	0.25	49	0.23	57	0.30	207	0.50
Matchedb	46	0.66	42	0.57	51	0.76	164	1.50
11–100	771	3.77	784	3.60	835	4.37	2539	6.08
Matched	562	8.01	563	7.64	578	8.64	1662	15.24
2–10	6242	30.55	6587	30.28	5942	31.07	13 371	32.01
Matched	3301	47.04	3551	48.18	3054	45.65	5551	50.89
Once	13 369	65.43	14 331	65.89	12 288	64.26	25 659	61.42
Matched	3108	44.29	3214	43.61	3007	44.95	3530	32.36
Total	20 434	100.00	21 751	100.00	19 122	100.00	41 776	100.00
Matched	7017	100.00	7370	100.00	6690	100.00	10 907	100.00

^a Category based on the copy number of tags.

^b Matched refers to the number of unique tags that match full-length cDNAs (Kikuchi et al., 2003).

^c Number refers to the number of unique tags in each category.

^d % refers to the proportion of unique tags in each category in total unique tags.