Table 2.
Classification of genes
| Class description | No.of genes | SNPs per gene | Average SNPs per base (%) | Microarray polymorphisms per gene | Average polymorphisms per probe (%) |
| Merozoite surface protein 3 | 12 | 13.42 | 0.57 | 32.58 | 8.13 |
| SERA family | 13 | 14.69 | 0.47 | 13.46 | 2.70 |
| AP2 transcription factors | 26 | 4.38 | 0.07 | 1.61 | 0.15 |
| Vir genes | 87 | 2.53 | 0.20 | 11.62 | 6.16 |
| Pv-fam-d proteins | 13 | 1.92 | 0.13 | 3.85 | 1.24 |
| Merozoite surface protein 7 | 11 | 3.73 | 0.36 | 3.09 | 2.14 |
| Tryptophan-rich antigens (Pv-fam-a) | 21 | 2.29 | 0.13 | 2.19 | 0.81 |
| Membrane proteins | 208 | 2.29 | 0.07 | 1.18 | 0.25 |
| Phist proteins (Pf-fam-b) | 18 | 1.28 | 0.10 | 1.06 | 0.51 |
| None | 4,421 | 1.53 | 0.06 | 0.91 | 0.25 |
| Pv-fam-b proteins | 5 | 0.60 | 0.05 | 0.80 | 0.53 |
| Early transcribed membrane proteins | 9 | 1.00 | 0.15 | 0.78 | 1.02 |
| RAD proteins (Pv-fam-e) | 40 | 1.10 | 0.12 | 0.75 | 0.53 |
| Pv-fam-h proteins | 4 | 1.25 | 0.10 | 0.50 | 0.41 |
| Ribosomal proteins | 132 | 0.27 | 0.04 | 0.15 | 0.13 |
| Pv-fam-g proteins | 3 | 0.00 | 0.00 | 0.00 | 0.00 |
Numbers are calculated for SNPs covered by at least three reads and the stringent cutoff of 1 × 10−15 for polymorphisms. “No. of genes” indicates the number of genes of a particular class.