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. Author manuscript; available in PMC: 2011 Jan 1.
Published in final edited form as: J Chem Theory Comput. 2010 Jan 1;2010(6):910–929.

Figure 3.

Figure 3

A. Stereo view of three adenines of the UAA/GAA motif from E.c. H40 forming an AAA stack which interacts with two C=G base pairs from the hairpin between H39 and H40 via A-minor interactions. C=G pair and the corresponding interacting adenine(s) are highlighted with the same color. Details of these interactions are visualized below the stereo view in corresponding green and red boxes, including a description of the A-minor interaction type. B. Stereo view of bacterial E.c. H40 interacting with hairpin between H39 (in green) and H40 and ribosomal protein L20 (in magenta). C. Stereo view of archaeal H.m. H40 interacting with the hairpin between H39 (in green) and H40, ribosomal protein L30 (in yellow) and H25 (in grey). D. Stereo view of bacterial E.c. H68 (exhibiting the alternative conformation of UAA/GAN internal loop) interacting with H75 (in grey).