Table 2. Allele and genotype frequencies in all cases (n=860) and controls (n=897), presented as %(n).
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Genotype frequency |
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
|
Allele |
Minor allele frequency |
Cases |
Controls |
||||||||||||||
| SNP | Position (bp) | 1 | 2 | Cases | Controls | 11 | 12 | 22 | 11 | 12 | 22 | ||||||||
|
rs162549 |
38148960 |
T |
A |
0.24 |
(384) |
0.23 |
(3946) |
0.07 |
(53) |
0.34 |
(278) |
0.59 |
(478) |
0.06 |
(48) |
0.35 |
(298) |
0.60 |
(509) |
|
rs10916 |
38150674 |
G |
T |
0.21 |
(347) |
0.23 |
(401) |
0.05 |
(38) |
0.32 |
(271) |
0.63 |
(530) |
0.06 |
(51) |
0.34 |
(299) |
0.60 |
(531) |
|
rs162562 |
38151019 |
C |
A |
0.20 |
(346) |
0.23 |
(404) |
0.04 |
(37) |
0.32 |
(272) |
0.63 |
(536) |
0.06 |
(51) |
0.34 |
(302) |
0.60 |
(537) |
|
rs1800440
(N453S) |
38151643 |
G |
A |
0.19 |
(313) |
0.18 |
(318) |
0.04 |
(34) |
0.29 |
(245) |
0.67 |
(566) |
0.03 |
(28) |
0.29 |
(262) |
0.67 |
(600) |
|
rs1056836
(L432V) |
38151707 |
G |
C |
0.45 |
(739) |
0.45 |
(788) |
0.21 |
(168) |
0.50 |
(403) |
0.30 |
(243) |
0.22 |
(188) |
0.48 |
(412) |
0.31 |
(267) |
|
rs162556 |
38159958 |
C |
T |
0.44 |
(732) |
0.47 |
(829) |
0.17 |
(147) |
0.52 |
(438) |
0.30 |
(256) |
0.21 |
(190) |
0.50 |
(449) |
0.28 |
(251) |
| rs10175368 | 38161365 | T | C | 0.28 | (471) | 0.27 | (478) | 0.08 | (65) | 0.41 | (341) | 0.51 | (431) | 0.07 | (62) | 0.40 | (354) | 0.53 | (472) |
Allele 1 is the minor allele in each case. Note that SNPs are presented in genomic order and the gene is transcribed from the reverse strand.