Table 3.

Up- and down-regulated cell cycle genes

Up-regulated cell cycle genes	Down-regulated cell cycle genes
Cell Cycle Genes
ANAPC10, APPL1, AURKA, BIRC5, BUB3, CCDC5, CCNA2, CCNB1, CCNB2, CCNE1, CDC2, CDC27, CDC37, CDC45L, CDC5L, CDC6, CDCA2, CDCA5, CDCA8, CETN3, CGREF1, CHAF1A, CHAF1B, CHEK2, CKAP2, DKC1, DTYMK, ERBB2IP, ESCO2, ESPL1, EXO1, FBXO5, GADD45B, GADD45GIP1, GMNN, GTSE1, ILF3, INCENP, IRF1, KATNA1, KIF15, KIF23, KIFC1, LIN9, MAD2L1, MCM5, MCM6, MIS12, MRPL41, MYBL2, NCAPG, NCAPG2, NCAPH, NDC80, NME1, NOLC1, NPM1, NUF2, NUSAP1, PARD3B, PBK, PES1, PFDN1, PIK3CB, PLK1, PPM1G, PRC1, PRMT5, PTPN11, RAD17, RAD21, RAD51, RANBP1, RASSF1, RASSF4, B1CC1, RBL1, RPA1, SASS6, SGOL1, SMC1A, SPC24, SPC25, SPIN1, STK11, SUGT1, TPX2, TTK, TXNL4A, UHRF1, YEATS4, YWHAQ, ZW10	BCL6, DBC1, DST, KHDRBS1, LATS1, NEDD9, PPP2R1B, RBM5, SESN1, TARDBP,
Cell Cycle Checkpoint Genes
BIRC5, BUB3, CDC2, CDC45L, CDC6, CHEK2, GTSE1, MAD2L1, PTPN11, RAD17, SMC1A, TTK, ZW10,
Cyclin Genes
CCNE1, RBL1, CCNB2, CCNA2, CCNB1	CCNL2
DNA-Damage Repair Genes
APEX2, CHAF1A, CHAF1B, DCLRE1B, ESCO2, EXO1, FEN1, GADD45B, GADD45GIP1, GEN1, GTF2H3, NSMCE2, NUDT1, POLD3, RAD17, RAD21, RAD51, RAD51C, RFC3, RPA1, SMC1A, SMC5, TOPBP1, TYMS, UBE2N, UHRF1, UNG