Table 1.
This table shows the regions that were identified by KC-SMARTR as being significantly aberrated in the B- and T-cell lymphoma dataset.
| Chromosome | Region (in kb) | Known VDJ loci in region |
|---|---|---|
| 1 | 51300 - 51300 | - |
| 1 | 168900 - 170100 | - |
| 1 | 171600 - 171900 | - |
| 1 | 172800 - 176700 | - |
| 1 | 187500 - 188100 | - |
| 2 | 88800 - 89400 | Ig* Kappa light chain |
| 6 | 1800 - 4200 | - |
| 6 | 5400 - 6300 | - |
| 6 | 11100 - 11100 | - |
| 6 | 13200 - 17100 | - |
| 6 | 19800 - 23100 | - |
| 6 | 24300 - 24300 | - |
| 7 | 38100 - 38700 | T-cell receptor Gamma |
| 7 | 141900 - 142200 | T-cell receptor Beta |
| 14 | 21300 - 22200 | T-cell receptor Alpha |
| 14 | 105300 - 105900 | Ig heavy chain |
| 22 | 21300 - 21600 | Ig Lambda light chain |
*Ig - Immunoglobulin
All positive control regions (i.e. the regions that are known to be involved in VDJ recombination) were identified. Additionally, five regions on chromosome 1 and six regions on chromosome 6 were found.