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. 2010 Sep 29;11(10):3769–3782. doi: 10.3390/ijms11103769

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© 2010 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland.

This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).

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Summary of computer assisted search for the putative binding sites for selected TFs. The putative binding sites were predicted by using Alggen Promo software, V 3.0.2 (http://alggen.lsi.upc.es). Factor name—transcription factor with its TRANSFAC (V 8.3) database accession number; Start and End—start and end positions of putative binding sequences, respectively; Dissimilarity—rate of dissimilarity (%) between the putative and consensus sequences; String—nucleotide sequence of potential binding site; Random Expectation (RE)—expected occurrences of the match in a random sequence of the same length as the query sequence according to the dissimilarity index (RE equally—equi–probability for the four nucleotides and RE query—nucleotide frequencies as in the query sequence).