Table 3.
contigs identified to flank or contain gene sequences of interest.
| Gene name | Closest Contigs | |
|---|---|---|
| Cotton fiber genes | Closest Genetic Markers | |
| Li2 | A1552, Gate4BC11 | ctg1749, ctg2409 |
| Li1 | Gate4CA09, Coau1J04 | ctg478, ctg8796, ctg10964, ctg11826 |
| N1/Fbl | Gafb28I12, pAR0244, Gafb29C08 | ctg11567, ctg3941, ctg5857, ctg 497, ctg1153, ctg1422, ctg1955, ctg2775, ctg3754, ctg8492, ctg11632, ctg93, ctg4489, ctg12050, ctg10883, ctg7872 |
| Other genes and gene families | Probes | |
| CesA | COV2311, COV2312, COV1269, COV1270 | ctg10763, ctg10561, ctg10858, ctg12310, ctg228 |
| GTPB | COV2309, COV2310 | ctg11814, ctg483, ctg669 |
| AdhA | COV1992, COV1993, COV1265, COV1266 | ctg10740, ctg11096, ctg11218, ctg11323, ctg12283 |
| AdhC | COV1267 | ctg1376 |
| AdhD | COV1924, COV1925 | ctg1376, ctg159 |
| Arabidopsis trichome genes | ||
| TUA6 | - | ctg1653, ctg3177 |
| TTG2 | COV1942 | ctg937 |
| ACT2 | COV1933 | ctg908 |
| GL2 | - | ctg601 |
| FRA1 | COV1932 | ctg6359, ctg1785, ctg59 |
| FRA2 | COV1940 | ctg1009, ctg11648 |
| GL3 | COV1945 | ctg686, ctg2610 |
| GL1 | COV1950 | ctg9085, ctg11801 |
| TRY | COV1936 | ctg471, ctg3808 |
| SPIKE1 | COV1937 | ctg10915, ctg157, ctg627 |