Table 1.
Distribution of sRNA matches between transposable elements and genes in three annotated genomic regions
| Total | Transposable elements | Genes | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Region | Organism | Length (bp) | sRNA counts | sRNA counts/bp | Length (bp) | sRNA counts | sRNA counts/bp | Length (bp) | sRNA counts | sRNA counts/bp |
| EU835198 | T. turgidum | 314,057 | 71,868 | 0.23 | 220,511 | 70,808 | 0.32 | 18,298 | 8 | 0.00 |
| DQ871219 | T. turgidum | 245,486 | 43,789 | 0.18 | 144,831 | 37,374 | 0.26 | 15,324 | 59 * | 0.00 |
| EF540321 | T. turgidum | 291,163 | 43,074 | 0.15 | 131,089 | 38,216 | 0.29 | 16,412 | 13 | 0.00 |
| EF567062 | T. aestivum | 137,614 | 17,447 | 0.13 | 83,355 | 17,008 | 0.20 | 14,335 | 30 | 0.00 |
| DQ537335 | T. aestivum | 292,102 | 41,761 | 0.14 | 231,351 | 39,091 | 0.17 | 11,096 | 32 | 0.00 |
* 54 of these match to a single gene annotated as a predicted leucine rich repeat gene.