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. 2010 Jun 30;11:409. doi: 10.1186/1471-2164-11-409

Table 2.

Expression levels and the origins of the top 20 highly expressed putative novel miRNA identified in the human and rhesus macaque brain transcriptomes

Human
Mature sequences Mapped reads Mapped region annotation Novel miRNA-star

AUCAUACAAGGACAAUUUCUUU 56157 hsa-mir-539*

AAUCAUUCACGGACAACACUUU 26634 hsa-mir-382*

ACCUUGGCUCUAGACUGCUUACU 13153 hsa-mir-212*

UGGGCUGUAGUGCGCUAUGCCGAU 8775 MER11B

GCGUUGGUGGUAUAGUGG 5183 tRNA-Gly-GGA

CAGGCAGUGACUGUUCAGACGUC 3586

GUCUCUGUGGCGCAAUCGGU 3467

UGUAGGGAUGGAAGCCAUGAAA 3170 hsa-mir-135a*

UGGGCUGUAGUGCGCUAUGCC 1437 7SLRNA

AGUUGGUCCGAGUGUUGUGGGUUAUU 1413 HY5 hsa-mir-1975*

AAUCUGAGAAGGCGCACAAGGUUU 958 LTR16D

AGAGGUUUUCUGGGUUUCUGUUU 832 hsa-mir-329*

AAUGUGUAGCAAAAGACAGA 746 hsa-mir-511*

AUCCCCAGAUACAAUGGACAAU 719

GGAGGAACCUUGGAGCUUCGGCA 695

GCUCUGACUUUAUUGCACUACU 686 hsa-mir-301a*

AUAUACAGGGGGAGACUCUUAU 636 hsa-mir-1185*

UGGUCGACCAGUUGGAAAGUAAU 601 hsa-mir-412*

AGGCAUUAGAUUCUCAUUAGGA 562 MER1A, MER1B

AUAGGACUCAUAUAGUGCCA 531


Rhesus macaque*

Mature sequences Mapped reads Mapped region annotation Novel miRNA-star

CCCCCCACUGCUAAAUUUGACUGGCUU 243332 HY4

AAUCAUUCACGGACAACACUUU 33573 hsa-mir-382*

GAGAGAUCAGAGGCGCAGAGU 18711

AUCAUACAAGGACAAUUUCUUU 16465 hsa-mir-539*

AAGUUUCUCUGAAUGUGUAGA 12107 U3

CUGUGGUUCCUGUAUGAAGACA 11261

UGUAGGGAUGGAAGCCAUGA 5546 hsa-mir-135a*

ACUGGACUUGGAGUCAGAAG 5503 MIRb

GCAUUGGUGGUUCAGUGGUAGAAUUC 4916 AluMacYa3

GGGGGCCGAUACACUGUACGAGA 3972 hsa-mir-128*

GUAAUGGUUAGCACUCUGG 2008 AluSx, Zaphod

AAUAUACAGGGGGAGACUCUUAU 1912 hsa-mir-1185*

UGGUCGACCAGUUGGAAAGUAAU 1526 hsa-mir-412*

GCUCUGACUUUAUUGCACUACU 1476 hsa-mir-301a*

UGAGUCUGUAAGAAAAGAGGAG 1472

AAUGUGUAGCAAAAGACAGAAU 1073 hsa-mir-511*

AGGGACUUUUGGGGGCAGAUGUGU 1068 hsa-mir-365*

GGAGACUGAUGAGUUCCCGGGA 922 hsa-mir-873*

CAACAAAUCACAGCCGGCCUCA 919 hsa-mir-7*

AAUCUGAGAAGGCGCACAAGGUUU 852 LTR16D

* miRNA annotation of rhesus macaque used for labelling of the identified novel miRNA-star sequences is based on human annotation by mapping of macaque miRNA precursors to the human genome by the reciprocal LiftOver.

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