Table 2.
Expression levels and the origins of the top 20 highly expressed putative novel miRNA identified in the human and rhesus macaque brain transcriptomes
Human | |||
---|---|---|---|
Mature sequences | Mapped reads | Mapped region annotation | Novel miRNA-star |
AUCAUACAAGGACAAUUUCUUU | 56157 | hsa-mir-539* | |
AAUCAUUCACGGACAACACUUU | 26634 | hsa-mir-382* | |
ACCUUGGCUCUAGACUGCUUACU | 13153 | hsa-mir-212* | |
UGGGCUGUAGUGCGCUAUGCCGAU | 8775 | MER11B | |
GCGUUGGUGGUAUAGUGG | 5183 | tRNA-Gly-GGA | |
CAGGCAGUGACUGUUCAGACGUC | 3586 | ||
GUCUCUGUGGCGCAAUCGGU | 3467 | ||
UGUAGGGAUGGAAGCCAUGAAA | 3170 | hsa-mir-135a* | |
UGGGCUGUAGUGCGCUAUGCC | 1437 | 7SLRNA | |
AGUUGGUCCGAGUGUUGUGGGUUAUU | 1413 | HY5 | hsa-mir-1975* |
AAUCUGAGAAGGCGCACAAGGUUU | 958 | LTR16D | |
AGAGGUUUUCUGGGUUUCUGUUU | 832 | hsa-mir-329* | |
AAUGUGUAGCAAAAGACAGA | 746 | hsa-mir-511* | |
AUCCCCAGAUACAAUGGACAAU | 719 | ||
GGAGGAACCUUGGAGCUUCGGCA | 695 | ||
GCUCUGACUUUAUUGCACUACU | 686 | hsa-mir-301a* | |
AUAUACAGGGGGAGACUCUUAU | 636 | hsa-mir-1185* | |
UGGUCGACCAGUUGGAAAGUAAU | 601 | hsa-mir-412* | |
AGGCAUUAGAUUCUCAUUAGGA | 562 | MER1A, MER1B | |
AUAGGACUCAUAUAGUGCCA | 531 | ||
Rhesus macaque* | |||
Mature sequences | Mapped reads | Mapped region annotation | Novel miRNA-star |
CCCCCCACUGCUAAAUUUGACUGGCUU | 243332 | HY4 | |
AAUCAUUCACGGACAACACUUU | 33573 | hsa-mir-382* | |
GAGAGAUCAGAGGCGCAGAGU | 18711 | ||
AUCAUACAAGGACAAUUUCUUU | 16465 | hsa-mir-539* | |
AAGUUUCUCUGAAUGUGUAGA | 12107 | U3 | |
CUGUGGUUCCUGUAUGAAGACA | 11261 | ||
UGUAGGGAUGGAAGCCAUGA | 5546 | hsa-mir-135a* | |
ACUGGACUUGGAGUCAGAAG | 5503 | MIRb | |
GCAUUGGUGGUUCAGUGGUAGAAUUC | 4916 | AluMacYa3 | |
GGGGGCCGAUACACUGUACGAGA | 3972 | hsa-mir-128* | |
GUAAUGGUUAGCACUCUGG | 2008 | AluSx, Zaphod | |
AAUAUACAGGGGGAGACUCUUAU | 1912 | hsa-mir-1185* | |
UGGUCGACCAGUUGGAAAGUAAU | 1526 | hsa-mir-412* | |
GCUCUGACUUUAUUGCACUACU | 1476 | hsa-mir-301a* | |
UGAGUCUGUAAGAAAAGAGGAG | 1472 | ||
AAUGUGUAGCAAAAGACAGAAU | 1073 | hsa-mir-511* | |
AGGGACUUUUGGGGGCAGAUGUGU | 1068 | hsa-mir-365* | |
GGAGACUGAUGAGUUCCCGGGA | 922 | hsa-mir-873* | |
CAACAAAUCACAGCCGGCCUCA | 919 | hsa-mir-7* | |
AAUCUGAGAAGGCGCACAAGGUUU | 852 | LTR16D |
* miRNA annotation of rhesus macaque used for labelling of the identified novel miRNA-star sequences is based on human annotation by mapping of macaque miRNA precursors to the human genome by the reciprocal LiftOver.