Table 4.
Percentages of markers passing quality control for different panels using the HapMap ASW sample
| Panel (# of AIMs) | # in ASW (% passed QC) * | Reference |
|---|---|---|
| Based on δ (2,076) | 2,058 (100%) | This manuscript |
| Based on FST (1,923) | 1,907 (100%) | This manuscript |
| 21 k random markers (21,637) | 21,235 (99.97%) | This manuscript |
| 2 k random markers (2,169) | 2,130 (99.95%) | This manuscript |
| Tian 2000 AIMs (2,000) | 1,022 (100%) | [28] |
| Tian 4222 AIMs (4,222) | 2,125 (100%) | [28] |
* AIMs in ASW HapMap data set and passing quality control for the different panels (locus call rate ≥ 95%, minor allele frequency > 0.01, and HWE p ≥ 1.0×10-3).