Table 2.
A summary of the analysis of the sRNA candidate
| sRNA candidate | Clone number | Intergenic region | strand | Clone(s) size (nt)a | Northern size (nt)b | sRNA? | 5' endc | 3' endc | sRNA size (nt)d |
|---|---|---|---|---|---|---|---|---|---|
| sRNA-C1 | 1 | XC0350-XC0351 | + | 83 | ~100 | Yes (sRNA-Xcc1) | 410075 | 410162 | 88 |
| sRNA-C2 | 214 | XC0901-XC0902 | - | 187 | ~200 | Yes (sRNA-Xcc2) | 1085474 | 1085288 | 187 |
| sRNA-C3 | 2 | XC3244-XC3245 | - | 70 | ~100, >1000 | Yes (sRNA-Xcc3) | 3890134 | 3890025 | 110 |
| sRNA-C4 | 5 | XC3924-XC3925 | - | 36 | ~100, >1000 | Yes (sRNA-Xcc4) | 4632459 | 4632338 | 122 |
| sRNA-C5 | 3 | XC4108-XC4109 | - | 20 | >1000 | No | ND | ND | |
| sRNA-C6 | 28 | XC4382-XC4383 | - | 70 | >1000 | No | ND | ND | |
| sRNA-C7 | 4 | XC4385-XC4386 | - | 63 | >1000 | No | ND | ND |
aThe size of the largest clone if more than 1 clone obtained.
bSize observed on Northern blots.
cEnds determined by 5'- or 3'- RACE mapping.
dSize calculated according to the 5'- and 3'-ends determined by RACE mapping.
ND, not done.