Table 5.
Frequency and features of the repeat elements identified in A. actinomycetemcomitans
| Repeat ID |
Estimated length (bp) |
Features |
Frequency in D7S-1 Genome |
Frequency in HK1651 Genome |
Frequency in D11S-1 Genome |
|---|---|---|---|---|---|
| REPEAT01 | 6505 | rRNA genes operon | 6 | 6 | 6 |
| REPEAT02 | 1269 | IS150 like element | 8 | 7 | 5 |
| REPEAT03 | 717 | IS200 like element | 0 | 4 | 5 |
| REPEAT04 | 139 | Unknown | 1 | 5 | 5 |
| REPEAT05 | 6326 | FHA domain protein | 2 | 0 | 0 |
| REPEAT06 | 4315 | WD-40 repeat, Hypothetical protein and FHA domain protein | 2 | 0 | 0 |
| REPEAT07 | 2156 | Sel1 domain protein repeat-containing protein | 4 | 0 | 0 |
| REPEAT08 | 2008 | Rhs element Vgr protein | 6 | 0 | 0 |
| REPEAT09 | 1523 | Glycoside hydrolase, family 19 gene | 5 | 0 | 0 |
| REPEAT10 | 1254 | FHA domain protein | 2 | 0 | 0 |
| REPEAT11 | 1227 | Tra5 Protein | 6 | 0 | 0 |
| REPEAT12 | 1060 | IS30 like element | 3 | 0 | 0 |
| REPEAT13 | 1225 | Translation elongation factor Tu | 2 | 2 | 2 |
| REPEAT14 | 837 | Putative FHA domain protein | 4 | 0 | 0 |
| REPEAT15 | 690 | IS427 like element | 4 | 0 | 0 |
| REPEAT16 | 472 | Sel1 domain protein repeat-containing protein | 7 | 0 | 0 |
| REPEAT17 | 387 | Hypothetical protein | 10 | 0 | 0 |
| REPEAT18 | 219 | Unknown | 8 | 4 | 2 |
| REPEAT19 | 162 | Hypothetical protein | 7 | 1 | 1 |
| REPEAT20 | 100 | Unknown | 7 | 5 | 5 |
| REPEAT21 | 135 | Autotransporter adhesin Aae | 4 | 3 | 2 |