Table 1. Genomic distribution of CpG loci in HEP data for each chromosome.
Gene association class | Number (%) | |||
Chromosome 6 | Chromosome 20 | Chromosome 22 | Sum | |
# of CpG loci (%) | 9757 (31.24) | 5172 (16.57) | 16308 (52.21) | 31237 (100) |
Promoter | 4856 (49.77) | 519 (10.03) | 5647 (34.63) | 11022 (35.29) |
CGIs | 5962 (61.10) | 1055 (20.40) | 6792 (41.65) | 13809 (44.21) |
Repeat | 220 (2.25) | 134 (2.59) | 475 (2.91) | 829 (2.65) |
TSS[-10k, -1k] | 1511 (15.49) | 475 (9.18) | 1908 (11.70) | 3894 (12.47) |
TSS[-1k, 0k] | 2795 (28.65) | 243 (4.70) | 3360 (20.60) | 6398 (20.48) |
5′UTR | 1094 (11.21) | 106 (2.05) | 1200 (7.36) | 2400 (7.68) |
Exon | 3121 (31.99) | 220 (4.25) | 4996 (30.64) | 8337 (26.69) |
Intron | 2797 (28.67) | 1940 (37.51) | 4566 (28.00) | 9303 (29.78) |
3′UTR | 62 (0.64) | 39 (0.75) | 551 (3.38) | 652 (2.09) |
TES[0k, 1k] | 291 (2.98) | 10 (0.19) | 317 (1.94) | 618 (1.98) |