Table 1.
Gene Name | Path | M | Meff | rs number | OR | Raw P | PMeff | SNP Type |
---|---|---|---|---|---|---|---|---|
Breast Cancer vs. No Breast Cancer | ||||||||
RPA3 | NER | 65 | 42 | rs17136898 | 1.34 | 0.0011 | 0.046 | intronic |
MSH3 | MMR | 46 | 20 | rs6151838 | 0.73 | 0.0024 | 0.048 | intronic |
ER+ Breast Cancer vs. No Breast Cancer | ||||||||
LIG1 | BER | 30 | 22 | rs274860 | 1.82 | 0.0003 | 0.006 | intronic |
LIG1 | BER | 30 | 22 | rs2304136 | 1.63 | 0.0006 | 0.013 | intronic |
ER− Breast Cancer vs. No Breast Cancer | ||||||||
RPA3 | NER | 65 | 42 | rs13237260 | 1.60 | 0.0002 | 0.007 | intergenic |
RPA3 | NER | 65 | 42 | rs17136898 | 1.73 | 0.0002 | 0.010 | intronic |
RPA3 | NER | 65 | 42 | rs10952069 | 1.57 | 0.0005 | 0.019 | intergenic |
POLE | POL | 18 | 10 | rs5745066 | 2.44 | 0.0027 | 0.027 | missense |
APEX1 | BER | 25 | 21 | rs2275008 | 1.46 | 0.0016 | 0.033 | intronic |
PR+ Breast Cancer vs. No Breast Cancer | ||||||||
FANCF | FAN | 3 | 3 | rs12805507 | 0.76 | 0.0029 | 0.009 | intergenic |
FANCF | FAN | 3 | 3 | rs408199 | 0.77 | 0.0029 | 0.009 | intergenic |
LIG1 | BER | 30 | 22 | rs274860 | 1.80 | 0.0006 | 0.013 | intronic |
RPA3 | NER | 65 | 42 | rs17136898 | 0.34 | 0.0009 | 0.038 | intronic |
LIG1 | BER | 30 | 22 | rs2304136 | 1.40 | 0.0020 | 0.045 | intronic |
PMS1 | MMR | 12 | 10 | rs5743030 | 0.61 | 0.0047 | 0.047 | intronic |
PR− Breast Cancer vs. No Breast Cancer | ||||||||
XRCC4 | NH | 34 | 23 | rs10080123 | 0.71 | 0.0005 | 0.012 | intronic |
XRCC4 | NH | 34 | 23 | rs1193693 | 0.72 | 0.0005 | 0.012 | intronic |
XRCC4 | NH | 34 | 23 | rs1017794 | 0.72 | 0.0006 | 0.014 | intronic |
DCLRE1C | NH | 15 | 12 | rs12572872 | 1.38 | 0.0016 | 0.020 | intronic |
XRCC4 | NH | 34 | 23 | rs10040363 | 0.73 | 0.0009 | 0.021 | intronic |
XRCC4 | NH | 34 | 23 | rs1011981 | 0.72 | 0.0011 | 0.026 | intronic |
XRCC4 | NH | 34 | 23 | rs10042854 | 0.73 | 0.0013 | 0.029 | intronic |
XRCC4 | NH | 34 | 23 | rs4591730 | 0.73 | 0.0013 | 0.031 | intronic |
XRCC4 | NH | 34 | 23 | rs11949301 | 0.73 | 0.0016 | 0.038 | intronic |