Table 3.

eQTL Overlap between LCLs from Dixon et al.⁹ and LCLs, Fibroblasts, and T Cells from Dimas et al.¹⁵

	Overlap with LCLs (Dixon et al.)
	α2 = 0.01		α2 = 0.005		α2 = 0.001
Dimas et al.	${\widehat{\mathit{\pi }}}_{\mathit{raw}}$	${\widehat{\mathit{\pi }}}_{\mathit{adjusted}}$	${\widehat{\mathit{\pi }}}_{\mathit{raw}}$	${\widehat{\mathit{\pi }}}_{\mathit{adjusted}}$	${\widehat{\mathit{\pi }}}_{\mathit{raw}}$	${\widehat{\mathit{\pi }}}_{\mathit{adjusted}}$
FDR1 = 0.001
LCLs	0.368	1.000a	0.312	1.000a	0.241	1.000a
Fibroblasts	0.237	0.633	0.202	0.643	0.151	0.624
T cells	0.257	0.690	0.230	0.732	0.167	0.691
FDR1 = 0.005
LCLs	0.326	1.000a	0.272	1.000a	0.208	1.000a
Fibroblasts	0.210	0.632	0.177	0.644	0.131	0.630
T cells	0.235	0.712	0.204	0.744	0.143	0.687

^aAssumed.