Table 3.
A) FFCE human inner ear (HI1–5) and B) otic capsule bone (B1–5) data. The number of unique peptides identified for each protein in each run are shown. Five sections were used (HI1–5). B1–5 samples were taken from the same sections. All the samples were analyzed in triplicate.
| A) | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Identified Proteins (20) | Accession Number | HI1-1 | HI1–2 | HI1–3 | HI2-1 | HI2-2 | HI2–3 | HI3-1 | HI3-2 | HI3-3 | HI4-1 | HI4-2 | HI4-3 | HI5-1 | HI5-2 | HI5-3 |
| Collagen alpha 1 I chain | CO1A1_HUMAN | 4 | 6 | 4 | 4 | 3 | 6 | 12 | 14 | 14 | 14 | 12 | 17 | 9 | 11 | 9 |
| Collagen alpha 2 I chain | CO1A2_HUMAN | 2 | 3 | 2 | 1 | 1 | 1 | 7 | 8 | 10 | 2 | 5 | 7 | 2 | 7 | 6 |
| Vitronectin | VTNC_HUMAN | 4 | 5 | 5 | 4 | 6 | 7 | 9 | 10 | 8 | 9 | 8 | 8 | 5 | 8 | 7 |
| Cochlin | COCH_HUMAN | 1 | 1 | 1 | 4 | 4 | 2 | 5 | 3 | 8 | 9 | 6 | 4 | 2 | 4 | 3 |
| Tubulin alpha 1B chain | TBA1B_HUMAN | 2 | 0 | 1 | 1 | 3 | 2 | 4 | 5 | 3 | 3 | 3 | 5 | 3 | 3 | 3 |
| Prothrombin | THRB_HUMAN | 0 | 0 | 0 | 1 | 0 | 3 | 5 | 6 | 6 | 5 | 3 | 0 | 2 | 3 | 2 |
| Alpha 2 HS glycoprotein | FETUA_HUMAN | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 5 | 3 | 4 | 5 | 4 | 1 | 0 | 0 |
| Myelin P0 protein | MYP0_HUMAN | 0 | 0 | 1 | 3 | 1 | 5 | 4 | 3 | 4 | 2 | 0 | 3 | 3 | 2 | 0 |
| Thrombospondin 1 | TSP1_HUMAN | 0 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 3 | 2 | 2 | 3 | 1 | 1 | 1 |
| Vimentin | VIME_HUMAN | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 2 | 1 | 1 | 2 | 1 | 0 | 0 | 0 |
| Hemoglobin subunit gamma 2 | HBG2_HUMAN | 2 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
| Keratin type II cytoskeletal 1 | K2C1_HUMAN | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 3 | 4 |
| Histone H2A type 2 A | H2A2A_HUMAN (+3) | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 1 | 0 | 3 | 2 | 0 | 0 | 0 |
| Histone H3 3 | H33_HUMAN | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 2 | 2 | 1 | 0 | 0 | 0 |
| Actin cytoplasmic 1 | ACTB_HUMAN (+1) | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| Histone deacetylase complex subunit SAP30L | SP30L_HUMAN | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | |
| Collagen alpha-1(II) chain | sp|P02458|CO2A1_HUMAN | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Tubulin beta 2C chain | FBB2C_HUMAN (+1) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Histone H4 | H4_HUMAN | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 |
| ATP synthase subunit beta mitochondrial | ATPB_HUMAN | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| B) | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Identified Proteins (8) | Accession Number | B1-1 | B1–2 | B1–3 | B2-1 | B2-2 | B2–3 | B3-1 | B3-2 | B3-3 | B4-1 | B4-2 | B4-3 | B5-1 | B5-2 |
| Collagen alpha 1 I chain | CO1A1_HUMAN | 10 | 15 | 9 | 13 | 13 | 13 | 7 | 10 | 11 | 9 | 12 | 11 | 9 | 16 |
| Collagen alpha 2 I chain | CO1A2_HUMAN | 8 | 4 | 2 | 1 | 1 | 1 | 2 | 6 | 9 | 7 | 8 | 13 | 7 | 3 |
| Vitronectin | VTNC_HUMAN | 5 | 6 | 4 | 6 | 6 | 6 | 6 | 6 | 7 | 7 | 6 | 8 | 7 | 5 |
| Prothrombin | THRB_HUMAN | 3 | 4 | 2 | 6 | 6 | 6 | 4 | 6 | 7 | 10 | 8 | 10 | 4 | 3 |
| Alpha 2 HS glycoprotein | FETUA_HUMAN | 3 | 1 | 1 | 0 | 0 | 0 | 4 | 4 | 2 | 1 | 2 | 3 | 3 | 0 |
| Thrombospondin 1 | TSP1_HUMAN | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 1 | 2 | 0 |
| Histone deacetylase complex subunit SAP30L | SP30L_HUMAN | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
| Keratin type II cytoskeletal 1 | K2C1_HUMAN | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| Biglycan | PGS1_HUMAN | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |