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. Author manuscript; available in PMC: 2010 Dec 7.
Published in final edited form as: Nat Genet. 2010 Feb 14;42(3):229–233. doi: 10.1038/ng.533

Table 2.

TMEM127 mutant tumors are transcriptionally enriched for kinase signaling pathway.

Gene Set (Pathway) NOM p-val FDR q-val
 Tyrosine Kinase
GHa 0 0.032
PDGFb 0.002 0.052
Insulin 0.006 0.068
EGFc 0.006 0.074
IGF1d 0.004 0.075
 Hypoxia 0.96 0.97
a

growth hormone

b

platelet-derived growth factor

c

epidermal growth factor

d

insulin-derived growth factor

Summary of gene set enrichment analysis (GSEA) analysis performed on ranked genes according to the ratios of transcripts from TMEM127-mutant and TMEM127-wild-type pheochromocytomas. Gene sets (pathways) with a nominal P-value (NOM) <0.01 and a false discovery rate (FDR) of <0.1 were considered significant. Results of multiple kinase pathways are displayed and contrasted with a nonsignificant hypoxia gene set.