Table 1.
Individual | Source | Chromosome 21 | Chromosome X | ||||
---|---|---|---|---|---|---|---|
Sites (bp)1 | Hets.2 | π, %3 | Sites (bp)1 | Hets.2 | π, %3 | ||
93A009 Flint (male) | Blood | 953,738 | 837 | 0.088 | 446,949 | 5 | 0.001 |
Fecal | 926,914 | 779 | 0.084 | 437,025 | 5 | 0.001 | |
A2A009 Sopulu (male) | Blood | 970,322 | 968 | 0.100 | 461,782 | 6 | 0.001 |
Fecal | 932,429 | 916 | 0.098 | 440,746 | 2 | 0.001 | |
X161 Judd (male) | Blood | 969,471 | 800 | 0.083 | 460,384 | 2 | 0.000 |
Fecal | 951,672 | 778 | 0.082 | 460,706 | 4 | 0.001 | |
91A016 Coty (male) | Blood | 969,566 | 848 | 0.087 | 462,098 | 5 | 0.001 |
Fecal | 941,109 | 791 | 0.084 | 457,146 | 1 | 0.000 | |
91A010 Peanut (female) | Blood | 964,745 | 764 | 0.079 | 467,563 | 178 | 0.038 |
Fecal | 904,775 | 712 | 0.079 | 462,743 | 173 | 0.037 | |
A1A005 Kierra (female) | Blood | 967,457 | 979 | 0.101 | 468,931 | 172 | 0.037 |
Fecal | 904,089 | 886 | 0.098 | 447,698 | 147 | 0.033 |
Number of sites with filtered read coverage sufficient for SNP identification.
Number of heterozygous sites in each sample identified using the criteria described in Materials and Methods (the X chromosome heterozygous sites in males are false positives).
Pairwise nucleotide diversity, the percentage of heterozygous sites (π for the X chromosome in males is an approximation of the false-positive error rate).