|
rearranges upon target binding, stabilizes last E of [QE]XE, may bind “vital N”, may reposition N-ribose ring |
Y246 |
H62 |
Y279 |
Y686 |
Y345 |
Y734 |
F67 |
|
binds N-ribose |
|
|
T280 |
T687 |
T346 |
T735 |
S68 |
|
reaction step 2, rearranges on target binding, aids rotation of O5D-PN bond, may “catch” oxacarbenium ion before transfer |
Y251A: 0; Y251F: 90 |
T71 |
Y284 |
Y691 |
F350 |
(S738, S739} |
Y72 |
Vital N |
binds A-phosphate |
N255 |
|
N288 |
N695 |
N354 |
N742 |
N76 |
|
may position “vital N” |
L258 |
|
L291 |
L698 |
L357 |
I745 |
L79 |
region B active site loop |
binds A-phosphate |
|
R43 |
R292 |
R699 |
R358 |
R746 |
R80 |
region 1 |
unclear |
Y294 |
Y24 |
Y340 |
V729 |
Y393 |
Y773 |
Y116 |
region 1 R |
binds A/N-phosphate |
R295A: 0; R→K: 1 |
R25 |
R341 |
R730 |
R394 |
R774 |
R117 |
region 1 R |
binds nicotinamide |
R296; (backbone H bond) |
A26 |
R342 |
G731 |
G395 |
V775 |
G118 |
|
binds A-riboseb (2 residues) |
E301A: 0 |
S28 |
∼343–348 (S344} |
∼732–737 (T732, N733 } |
∼396–400 (N399, E400} |
∼776–780; (T777} |
∼119–123 (W120 } |
|
binds adeninec (1–2 residues) |
Y333? |
Y41? |
∼380–384 (Q382, N384} |
∼748–752; (E750} |
∼410–412 |
∼802–806 |
∼135–139 (E137} |
Region 2 STS |
unclear |
F336 |
F77 |
Y385 |
F753 |
F413 |
Y807 |
F140 |
region 2 STS |
positions last E of [QE]XE via H-bonds, stabilizes oxacarbenium ion |
S338A: 5 |
S79 |
S387 |
S755 |
S415 |
S809 |
S142 |
region 2 STS |
stiffens active site via H bonds to nearby β-sheet |
T339A: 20 |
T80 |
T388 |
T756 |
T416 |
T810 |
T143 |
region 2 STS |
orients ARTT loop and [QE] of [QE]-X-E |
S340A: 25 |
T81 |
S389 |
S757 |
S417 |
S811 |
S144 |
PN loop (region E) |
stacking interaction with nicotinamide; mobile |
F349A: 0; F349Y: 20 |
|
Y398 |
F768 |
F426 |
F819 |
F153 |
PN loop (region E) |
binds N-phosphate |
R352A: 0 |
|
R402 |
∼769–773 |
R437 |
R829 |
R166 |
ARTT loop |
Target recognition, may reorient on ligand binding; can bind last E of [QE]XE |
Y375 |
H125 |
Y426 |
Y790 |
|
|
Y186 |
ARTT loop |
reaction step 3, substrate specificity; (mobile) |
E378A: 0; E378D: 0; E378Q: 0 |
E128 |
Q429 |
E793 |
E461 |
Q884 |
E189 |
region 3 EXE |
binds N-ribose, reaction step 1 |
E380A: 0; E380D: 0 |
E130 |
E431 |
E795 |
E463 |
E886 |
E191 |
Region 3 |
Unclear |
L382 |
L59 |
L433 |
L797 |
L465 |
L888 |
L193 |