Table 3.
SNP MINOR ALLELE | SNP GENOTYPE FREQUENCY | |||||
---|---|---|---|---|---|---|
Populationa/SNP | Minor Allele | MinorAllele Frequency (MAF) | Minor Allele Homozygote | Heterozygote | Common Allele Homozygote | HWE p-value |
South/Central American | ||||||
rs1546124 | G | 29% | 10% | 37% | 53% | 0.15 |
rs8061351 | ng | ng | ng | ng | ng | ng |
rs2326398 | G | 22% | 5% | 36% | 59% | 0.29 |
rs4783099 | ng | ng | ng | ng | ng | ng |
Hispanic | ||||||
rs1546124 | G | 30% | 11% | 38% | 51% | 0.10 |
rs8061351 | C | 33% | 11% | 43% | 46% | 0.84 |
rs2326398 | G | 24% | 6% | 36% | 58% | 1.0 |
rs4783099 | T | 43% | 16% | 54% | 30% | 0.38 |
ALL Caucasian | ||||||
rs1546124 | G | 32% | 11% | 41% | 48% | 0.12 |
rs8061351 | C | 28% | 8% | 39% | 53% | 0.62 |
rs2326398 | G | 33% | 10% | 45% | 45% | 0.63 |
rs4783099 | T | 36% | 11% | 50% | 39% | 0.0006 |
North American Caucasian | ||||||
rs1546124 | G | 32% | 11% | 41% | 48% | 0.14 |
rs8061351 | C | 28% | 8% | 39% | 53% | 0.49 |
rs2326398 | G | 32% | 11% | 43% | 46% | 0.72 |
rs4783099 | T | 37% | 11% | 50% | 39% | 0.006 |
Asian | ||||||
rs1546124 | C | 47% | 21% | 51% | 28% | 0.70 |
rs8061351 | C | 38% | 16% | 44% | 40% | 0.25 |
rs2326398 | A | 26% | 7% | 38% | 55% | 0.81 |
rs4783099 | C | 42% | 18% | 50% | 33% | 0.75 |
Population subgroups (see Table 1): South/Central American=Guatemala and ECLAMC; Hispanic=Guatamala, ECLAMC, Texas-Hispanic; ALL Caucasian=Iowa, Texas-Caucasian, Pittsburgh and St Louis, Madrid, Hungary, Turkey; North American Caucasian=Iowa, Texas-Caucasian, Pittsburgh and St Louis;Asian= Philippines, China
ng = not genotyped