Table 3.
Pairwise comparisons of different mouse HD classifications: purity scores
| SCI-PHYEntropy mH178 | SCI-PHYEntropy H559 | CD-HIT | OSLPID | OSLTRE mH178 | OSLTRE H559 | OSLEval mH178 | OSLEval H559 | |
|---|---|---|---|---|---|---|---|---|
| SCI- PHYEntropy mH178 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 |
| SCI- PHYEntropy H559 | 0.53 | 1.00 | 0.91 | 0.96 | 0.98 | 0.93 | 0.98 | 0.98 |
| CD-HIT | 0.53 | 0.92 | 1.00 | 0.96 | 0.98 | 0.91 | 0.98 | 0.98 |
| OSLPID | 0.56 | 0.94 | 0.96 | 1.00 | 1.00 | 0.93 | 1.00 | 1.00 |
| OSLTRE mH178 | 0.50 | 0.85 | 0.85 | 0.89 | 1.00 | 0.82 | 0.95 | 0.95 |
| OSLTRE H559 | 0.56 | 0.98 | 0.98 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 |
| OSLEval mH178 | 0.50 | 0.79 | 0.80 | 0.84 | 0.91 | 0.77 | 1.00 | 1.00 |
| OSLEval H559 | 0.50 | 0.79 | 0.80 | 0.82 | 0.89 | 0.77 | 0.98 | 1.00 |
Summary of the pairwise Purity scores (as defined in ‘Materials and Methods’ section) between the seven different fine-grained sequence-based classifications. Classifications listed along columns were considered as ‘target’ partitions, whereas those listed along rows were used as ‘reference’ partitions. See Table 2 for information on these classifications.
Low Purity values, underlined (column 2), indicate a poor correspondence between the target classifications in columns 1 and the SCI-PHYentropy mH178 classification used as reference.
In all other cases, the target classifications represent near perfect subdivisions of the reference partitions.