Table 5.
GQS Motif | Genica |
Codingb |
5′-UTRc |
3′-UTRd |
Introne |
|||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GQS | Df | GQS | Df | %g | GQS | Df | %g | GQS | Df | %g | GQS | Df | %g | |
G3+L1–7 | 225 | 2.9 | 174 | 4.3 | 77 | 10 | 2.6 | 4 | 14 | 2.2 | 6 | 27 | 1.0 | 12 |
G3+L1–3 | 43 | 0.6 | 28 | 0.7 | 65 | 4 | 1.1 | 9 | 4 | 0.6 | 9 | 7 | 0.3 | 16 |
G2+L1–4 | 19 985 | 257.8 | 17 989 | 443.1 | 90 | 417 | 110.0 | 2 | 657 | 105.5 | 3 | 922 | 34.3 | 5 |
G2+L1–2 | 5435 | 71.1 | 4897 | 120.6 | 90 | 124 | 32.7 | 2 | 128 | 20.5 | 3 | 286 | 10.6 | 5 |
G2+L1 | 3496 | 45.1 | 3174 | 78.2 | 91 | 74 | 19.5 | 2 | 63 | 10.1 | 2 | 185 | 6.9 | 5 |
Provided are distribution and density of GQS in different regions of the genes from all gene models.
aGenic region is comprised of bcoding, c5′-UTR, d3′-UTR and eIntron. fGQS density is defined as the total number of GQS per Megabase in the specified region. Number of megabases per region: genic region 74.65 Mb, CDS 39.59 Mb, 5′-UTR 3.62 Mb, 3′UTR 6.02 Mb and intron 25.43 Mb. gPercentages were calculated relative to the genic region. Raw numbers (GQS), GQS densities (D) and percentages (%) of GQS. Quadparser search parameters were set to include only G-patterns, which will be found in RNA, and exclude C-patterns.