Table 1.
Summary of mapping all the RNA-Seq reads to the reference genome (Btau4.0) obtained from seven pooled milk samples
| Uniquely mapped reads | Nonspecifically mapped reads | Mapped reads | ||||
|---|---|---|---|---|---|---|
| No. of reads | % | No. of reads | % | No. of reads | % | |
| Total exon reads | 59888107 | 83 | 12480476 | 17 | 72368583 | 87.5 |
| Exon-exon readsa | 10961868 | 89 | 1313183 | 11 | 12275051 | |
| Total intron reads | 9100877 | 88 | 1271041 | 12 | 10371918 | 12.5 |
| Exon-intron readsb | 1475160 | 90 | 166238 | 10 | 1641398 | |
| Total gene reads | 68988984 | 83 | 13751517 | 17 | 82740501 | 100 |
a Exon-exon reads reads mapping to two contiguous exons. Number is included in total exon reads
b Exon-intron reads reads mapping an exon and a contiguous intron. Number is included in total intron reads