Table 4.
Unique SNPs detected by RNA-Seq that were validated using the KASPar Genotyping System
| Gene | Chromosome | SNP | Position | Frequency (%) | Confirmeda |
|---|---|---|---|---|---|
| DDIT3 | 5 | T/A | 60417924 | 50.0/50.0 | Yes |
| INSIG2 | 2 | T/C | 73132468 | 50.0/50.0 | Yes |
| STAT5A | 19 | G/A | 43749704 | 54.5/45.5 | Yes |
| STAT5A | 19 | G/C | 43746587 | 70.6/29.4 | No |
| STAT5A | 19 | T/A | 43741732 | 66.7/33.3 | No |
DDIT3 DNA damage inducible transcript 3, INSIG2 insulin-induced gene 2, STAT5A signal transducer and activator of transcription 5A
aSNP confirmed by KASPar SNP Genotyping System and Sanger resequencing