Table 1.
Autonomous and Nonautonomous Families of Vingi non-LTR Retrotransposons in the Erinaceus europaeus Genome.
Name | Length (bp) | Copy number of full-length copies | Corresponding positions in Vingi-1_EE | Average identity ± standard deviationa |
Vingi-1_EE | 3085 | 242 | 1-3085 | 0.9782 ± 0.0058 |
Vingi-1N1_EE | 102 | 92 | 1-80, 3062-3085 | 0.9758 ± 0.0154 |
Vingi-1N2_EE | 403 | 20 | 1-129, 2820-3082 | 0.9882 ± 0.0715 |
Vingi-1N3_EE | 195 | 6273 | 1-149, 3036-3081 | 0.9751 ± 0.0003 |
Vingi-1N4_EE | 574 | 101 | 1-170, 2679-3085 | 0.9723 ± 0.0141 |
Vingi-1N5_EE | 628 | 106 | 1-211, 2669-3085 | 0.9731 ± 0.0131 |
Vingi-1N6_EE | 339 | 12 | 1-209, 2953-3082 | 0.9758 ± 0.1151 |
Vingi-1N7_EE | 874 | 8 | 1-212, 2324-2405, 2502-3081 | 0.9777 ± 0.1729 |
Vingi-1N8_EE | 680 | 12 | 1-222, 2625-3082 | 0.9743 ± 0.1149 |
Vingi-1N9_EE | 619 | 5 | 1-243, 2709-3084 | 0.9814 ± 0.2776 |
Vingi-1N10_EE | 730 | 12 | 1-271, 2623-3081 | 0.9838 ± 0.1159 |
Vingi-1N11_EE | 675 | 8 | 3-321, 2726-3080 | 0.9849 ± 0.1741 |
CpG dinucleotides, prone to quick decay to TpG and CpA, in the consensus sequences were excluded in calculations of identity.