Table 3.
Correlation coefficient between microRNA and gene target expression The previous analysis indentified ten potential microRNA-gene target pairs. For each microRNA and gene target we performed real-time PCR analysis in order to identify their expression levels in MMAD tissues. Due to the fact that microRNAs are negative regulators of gene expression, we were interested in the microRNA-gene target pairs with very high inversely correlated expression levels. In the table above we present the correlation coefficient between microRNA and gene target expression levels, starting from the most significant. The most significant inverse correlation was between miR-200b and MATR3 expression levels. We have identified miR-200b as the most highly down-regulated (-9.36 fold) microRNA in MMAD (according to microRNA microarray data) while MATR3 was highly up-regulated (5.56 fold) in MMAD tissues (cDNA microarray data from Bourdeau et al study).
| microRNA | Gene Target | Correlation coefficient |
|---|---|---|
| miR-200b | MATR3 | -0.984 |
| miR-203 | KRT1 | -0.877 |
| miR-196a | CPE | -0.813 |
| miR-196b | CPE | -0.807 |
| miR-203 | CCNG1 | -0.673 |
| miR-200c | MATR3 | -0.554 |
| miR-200b | PUM2 | -0.534 |
| miR-200c | PUM2 | -0.512 |
| miR-148a | TXNIP | -0.451 |
| miR-146b | PSMC6 | -0.404 |