Table 2.

Common species in human faeces. Seventy five bacterial species with >1% genome sequence coverage in >50% of 124 adult humans. After Qin et al. [6]

Faecalibacterium prausnitzii	Bacteroides fragilis
Roseburia intestinalis	Eubacterium biforme
Dorea formicigenerans	Bacteroides eggerthii
Bacteroides vulgatus	Streptococcus thermophilus
Clostridium sp	Bacteroides capillosus
Bacteroides uniformis	Holdemania filiformis
Eubacterium hallii	Clostridium leptum
Bacteroides sp.	Prevotella copri
unknown sp	Clostridium sp.
Coprococcus comes	Bacteroides plebeius
Eubacterium rectale	Butyrivibrio crossotus
Ruminococcus sp.	Bacteroides coprocola
Dorea longicatena	Bacteroides finegoldii
Bacteriodes xylanisolvens	Clostridium bartlettii
Bacteroides sp.	Clostridium sp.
Bacteroides sp.	Escherichia coli
Ruminococcus torques	Parabacteroides johnsonii
Bacteroides sp.	Subdoligranulum variabile
Alistipes putredinis	Bacteroides intestinalis
Collinsella aerofaciens	Catenibacterium mitsuokai
Parabacteroides distasonis	Clostridium bolteae
Eubacterium siraeum	Bifidobacterium pseudocatenulatum
Bacteroides ovatus	Anaerotruncus colihominis
Bacteroides sp.	Bifidobacterium catenulatum
Bacteroides sp.	Ruminococcus gnavus
Bacteroides thetaiotaomicron	Bacteroides coprophilus
Bacteroides dorei	Bacteroides pectinophilus
Parabacteroides merdae	Gordonibacter pamelaeae gen. nov. sp.
Bifidobacterium longum subsp. infantis	Clostridium asparagiforme
Ruminococcus obeum	Clostridium nexile
Bifidobacterium adolescentis	Blautia hansenii
Bacteroides caccae	Clostridium scindens
Ruminococcus bromii	Enterococcus faecalis
Ruminococcus lactaris	Mollicutes bacterium
Eubacterium ventriosum	Bryantella formatexigens
Coprococcus eutactus	Clostridium methylpentosum
Akkermansia muciniphila
Bacteroides stercoris
Bacteroides cellulosilyticus