. Author manuscript; available in PMC: 2010 Dec 20.

Published in final edited form as: Ann Appl Stat. 2010 Sep 1;4(3):1342–1364. doi: 10.1214/09-aoas322

Table 4.

Analysis of variance for the ranked SNP Bayes factors contrasting the prior hyperparameters (default a = 1 versus a = 1/8) and method of imputation (full imputation with 100 data sets versus a modal estimate of the missing genotypes) for the 70 SNPs in the NCOCS pathway that passed the marginal screen

	d.f.	Sum Sq.	Mean Sq.	F-value	Pr(> F)
SNP	69	1635891.00	23708.57	208.04	<2 × 10⁻¹⁶
Prior	1	169641.66	169641.66	1488.60	0.0000
Impute	1	134.41	134.41	1.18	0.28
Prior:impute	1	53.16	53.16	0.47	0.50
Residuals	207	23589.77	113.96