Table 2.
E4B U-box | Ubc4 | E4B U-box–UbcH5c | |
---|---|---|---|
Data collection | |||
Space group | P 4 3 2 | P 1 21 1 | P 6 2 2 |
Cell dimensions | |||
a, b, c (Å) | 83.40, 83.40, 83.40 | 28.23, 59.12, 45.42 | 142.71, 142.71, 83.13 |
α β γ °) | 90, 90, 90 | 90, 106.73, 90 | 90, 90, 120 |
Resolution (Å) | 24.07–2.60 (2.64–2.60) | 43.31–1.60 (1.64–1.60) | 32.79–3.17 (3.23–3.17) |
Rsym or Rmerge | 0.139 (0.655) | 0.061 (0.123) | 0.192 (0.777) |
I/σI | 46.2 (7.3) | 17.1 (13.2) | 18.1 (6.2) |
Completeness (%) | 98.6 (99) | 99.9 (99.5) | 92.2 (96.0) |
Redundancy | 37.0 (36.7) | 3.7 (3.6) | 58.8 (57.6) |
Refinement | |||
Resolution (Å) | 24.07–2.60 | 43.41–1.60 | 32.79–3.17 |
No. reflections | 3328 | 17905 | 8196 |
Rwork/Rfree | 0.185/0.254 | 0.189/0.229 | 0.236/0.279 |
No. of atoms | 657 | 1449 | 1865 |
Protein | 624 | 1246 | 1850 |
Ligand/ion | N/A | N/A | N/A |
Water | 33 | 203 | 15 |
B-factors | |||
Protein | 42.58 | 5.158 | 93.63 |
Ligand/ion | N/A | N/A | N/A |
Water | 41.52 | 18.27 | 65.53 |
R.m.s. deviations | |||
Bond lengths (Å) | 0.002 | 0.023 | 0.003 |
Bond angles (°) | 0.588 | 2.018 | 0.689 |
Ramachandran plot | |||
Preferred regions (%) | 94.3 | 94.9 | 88.5 |
Allowed regions (%) | 5.7 | 4.4 | 6.6 |
Outliers (%) | 0 | 0.7 | 4.9 |
Data for the highest resolution shell are shown in parentheses.