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. Author manuscript; available in PMC: 2011 Dec 15.
Published in final edited form as: Anal Chem. 2010 Nov 9;82(24):10068–10074. doi: 10.1021/ac1020358

Table 5. AI-ETD and ETcaD, peptide spectral matches.

Comparison of AI-ETD and ETcaD using both tryptic and LysC digested whole cell lysates indicates that AI-ETD is superior for peptide precursors of all charge states and doubly protonated precursors.

AI-ETD ETcaD
Lys C; all z 2978 1940
Lys C; z=2 199 58
Trypsin; all z 2441 1344
Trypsin; z=2 367 70