Table 6.
Examples of yeast proteins with highly confidently (UbPred score ≥ 0.95) predicted Ub sites.
| ORF | Protein name | Predicted Ub site(s)* |
|---|---|---|
| Ten high confidence Rsp5 substrates | ||
| YKR021W | ALY1 | 168, 203 |
| YJL084C | ALY2 | 144, 704, 871 |
| YNR069C | BSC5 | 41 |
| YOR042W | CUE5 | 15, 39, 76, 347, 395, 396 |
| YGR136W | LSB1 | 41 |
| YPL193W | RSA1 | 10, 191, 271, 276 |
| YMR140W | SIP5 | 7, 324 |
| YJL151C | SNA3 | 125 |
| YHR131C | YHR131C | 795 |
| YGL161C | YIP5 | 46, 57 |
| Ten proteins with short half-life (≤ 4 min) | ||
| YDR421W | ARO80 | 85, 87, 826 |
| YDL149W | ATG9 | 113, 138 |
| YLR220W | CCC1 | 74 |
| YLR228C | ECM22 | 355, 362, 379, 430 |
| YOR033C | EXO1 | 462, 470, 522, 527 |
| YHR061C | GIC1 | 141, 153, 217 |
| YMR172W | HOT1 | 505, 531, 576 |
| YER104W | RTT105 | 52 |
| YJR056C | YJR056C | 19, 97, 124 |
| YPL158C | YPL158C | 205, 399 |
| Ten transcriptional regulators | ||
| YKL112W | ABF1 | 133, 156, 712 |
| YNL068C | FKH2 | 795, 828, 836 |
| YEL009C | GCN4 | 194 |
| YDL056W | MBP1 | 248, 743 |
| YOR372C | NDD1 | 345 |
| YHR206W | SKN7 | 60 |
| YMR016C | SOK2 | 714 |
| YNL309W | STB1 | 65, 119, 178 |
| YER111C | SWI4 | 752, 842 |
| YLR182W | SWI6 | 140, 186 |
*
Only the sites with UbPred score of ≥ 0.95 are shown