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. Author manuscript; available in PMC: 2011 Mar 1.
Published in final edited form as: Curr Protoc Cell Biol. 2010 Mar;CHAPTER:Unit–4.2521. doi: 10.1002/0471143030.cb0425s46

Table 1. Scanning parameters for acquiring high resolution Z stacks of mitochondria.

Parameter Value
*Zoom 2.5-3
Pixel size 1024×1024
Scan speed 7
Scan number for averaging 2
Pinhole 1 airy unit
Laser intensity 1-20%
Detector gain 600
*

High resolution imaging of mitochondria would limit the investigator to scan one cell at a time, or part of a cell or even individual mitochondria. To image a whole cell the zoom factor (digital magnification) will have to be decided based on the size of the cell. A zoom factor of more than 5 is not recommended as this would cause the image to be pixelated but can be used, if absolutely necessary, with adjusting other parameters.

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