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. 2010 Nov 28;27(1):142–143. doi: 10.1093/bioinformatics/btq607

Table 1.

Data required to establish a thermodynamically constrained stoichiometric model of metabolism

Data Ref./range
Metabolic reconstruction (Thiele and Palsson, 2010)
Experimental ΔiGo and ΔiHo (Alberty, 2006)
+/- Group contribution estimate of ΔiGo (Jankowski et al., 2008)
Metabolite structure data file .mol
Temperature 273–313 K
pH 5 to 9
Electrical potential (mV)
Ionic strength 0–0.35 M
Metabolomic data

A group contribution estimate of ΔiGo is necessary if no experimental data are available.