Table 3.
Summary of prediction and annotation of Pol-II promoters from published ChIP-seq datasets
| Stage | D0 | D1 | D2 | D3 | D4 | D6 | ES Cell |
|---|---|---|---|---|---|---|---|
| Total tags | 5252311 | 5252311 | 5252311 | 5252311 | 5252311 | 5252311 | 2688589 |
| # of peaks | 108416 | 134674 | 153097 | 140137 | 159599 | 88606 | 13942 |
| # of peaks predicted as promoter | 24888 | 25179 | 24510 | 25101 | 22374 | 15838 | 5889 |
| # of predicted promoters assigned to known coding genes | 10645 | 10632 | 10349 | 10539 | 9701 | 8153 | 5034 |
| # of predicted promoters assigned to known non-coding genes | 1039 | 1095 | 1088 | 1101 | 1029 | 708 | 313 |
| # of unassigned predicted promoters (potential novel promotes) | 11684 | 13452 | 13673 | 13461 | 11644 | 6977 | 542 |