Table 4. Motif 1; upstream of induced annotated genes.
| Gene | Start | P-value | Sequence(Consensus = TTTACTGTATATATATACAGTATTT) |
| sbmC | 64 | 1.53E-12 | TATACTGTATATAAAAACAGTATCA |
| umuD | 58 | 5.47E-12 | ACTACTGTATATAAAAACAGTATAA |
| recN | 29 | 5.47E-12 | TTTACTGTATATAAAACCAGTTTAT |
| istR2 | 37 | 6.63E-12 | TTTACTGTATAAATAAACAGTAATA |
| dinI | 59 | 1.91E-10 | TTACCTGTATAAATAACCAGTATAT |
| dinD | 34 | 7.87E-10 | ACAACTGTATATAAATACAGTTACA |
| lexA | 50 | 7.87E-10 | TTTGCTGTATATACTCACAGCATAA |
| yebG | 61 | 1.34E-09 | TATACTGTATAAAATCACAGTTATT |
| ruvA | 29 | 2.67E-09 | TTCGCTGGATATCTATCCAGCATTT |
| uvrD | 21 | 4.24E-09 | AAATCTGTATATATACCCAGCTTTT |
| sulA | 56 | 5.06E-09 | TGTACTGTACATCCATACAGTAACT |
| cho | 64 | 1.36E-08 | TACACTGGATAGATAACCAGCATTC |
| recA | 19 | 1.71E-08 | GATACTGTATGAGCATACAGTATAA |
| uvrB | 3 | 2.13E-08 | TGAACTGTTTTTTTATCCAGTATAA |
| polB | 25 | 9.94E-08 | ATGACTGTATAAAACCACAGCCAAT |
| dinG | 63 | 1.11E-07 | AATATTGGCTGTTTATACAGTATTT |
| dinB | 63 | 1.38E-07 | ATCACTGTATACTTTACCAGTGTTG |
| ftsK | 1 | 1.46E-07 | ACTCCTGTTAATCCATACAGCAACA |
The motif search was performed on the 100 nt upstream of differentially expressed genes. Start denotes the start point of the motif relative to the start of the investigated sequence.