Table 9. Novel differentially expressed transcripts with ORFs.
| ID | Start | End | Strand | Fold change(log2 scale) | Left gene | Right gene |
| D1 | 2009278 | 2009359 | - | +1.4 | yedL | fliE |
| D2 | 3634009 | 3634096 | - | +1.4 | Reverse of yhiP * | Reverse of yhiP * |
| D3 | 4529978 | 4530035 | - | −1.4 | sgcX | yjhP |
| D4 | 4533067 | 4533673 | + | −0.8 | yjhX | yjhS |
| D5 | 4570772 | 4571459 | + | −1.4 | yjiS | mcrC |
| D6 | 4571523 | 4571883 | + | −1.17 | yjiS | mcrC |
*As the gene yhiP is not well documented the reverse strand of this gene was also included in the search space. The reverse strand sequences of well documented genes were not included due to the reverse transcription artefact problem.