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. 2010 Oct 27;285(53):42105–42114. doi: 10.1074/jbc.M110.172098

TABLE 2.

HB occupancies at the active site

HB occupancies were calculated using VMD (53). Occupancies of >100 are obtained if multiple HBs are formed between two residues. Values with an asterisk are significant according to nonoverlapping standard deviations.

Pairs 7.4
7.4 NB-DNJ
7.4 NB-DNJ+
4.5 NB-DNJ+
4.5
WT N370S WT N370S WT N370S WT N370S WT N370S
127···179 9.3 55.5* 3.1 12.2* 0.1 0 0 0 11.6 24.3
127···396 42.3* 21.9 44.0* 15.4 43.6 42.2 44.5 47.1 39.1 23.2
312···366 12.1 16.5 9.8 9.8 14.2* 5.0 16.0* 10.1 10.3 8.2
312···370a 8.8* 0.1 8.9* 0.0 6.1* 0.0 9.9* 0.7 17.9* 0.0
315···366a 0.1* 0.1 0.1 0.0 0.1 0. 7.9* 2.7 0.3 17.7*
313···340a 100.8 114.9 97.5 113.0* 126.6* 115.0 115.6 114.8 77.4 119.9*
313···342a 27.6 41.7* 38.6* 31.5 55.5* 48.1 41.1* 36.2 15.2 21.6*

a HB pairs with the most significant changes for the active site are shown.