Appendix 1. Genes of the developing head epidermis of O. taurus with the most divergent expression patterns between morphs and sexes.
Genes were filtered as follows: 1) genes were significantly differentially expressed in the head epidermis relative to the abdomen (M > 0) or in the abdomen relative to the head (M < 0) in at least one treatment category; 2) absolute difference in expression (M value) was greater than 1 when horned males were compared to both females and sneaker males. Shown are M values for genes fitting these criteria in head epidermis-abdomen arrays for tissue from females, horned males and sneaker males. Gene annotation is according to (Kijimoto et al. 2009).
| Gene | Female | Horned | Sneaker |
|---|---|---|---|
| ---NA--- | −2.61264 | −4.26973 | −2.70081 |
| ---NA--- | −2.37502 | −3.73505 | −2.3695 |
| ---NA--- | −1.32496 | −3.67555 | −1.73222 |
| cg3960-isoform d | −1.63447 | −2.95738 | −1.63701 |
| ---NA--- | −1.66075 | −2.69271 | −1.65682 |
| ---NA--- | −0.19619 | −1.64336 | −0.48173 |
| von willebrand factor | −0.31834 | −1.57492 | −0.50605 |
| −2.79414 | −1.50176 | −2.60504 | |
| hemolymph proteinase 19 | −0.01858 | −1.47872 | −0.23046 |
| cuticular proteinrr-1 family (agap009868-pa) | −2.69777 | −1.37197 | −2.55881 |
| cuticular proteinrr-1 family (agap009868-pa) | −2.76351 | −1.32027 | −2.42512 |
| translationally controlled tumor protein | 0.034448 | −1.09268 | −0.08592 |
| ---NA--- | 0.577938 | −0.64285 | 0.464805 |
| cg7759-isoform a | −3.12349 | −0.57699 | −2.50153 |
| ---NA--- | 1.009491 | −0.54194 | 0.573985 |
| ---NA--- | −1.55917 | −0.42465 | −1.51986 |
| cg16973-isoform c | −1.53556 | −0.1353 | −1.3262 |
| cg17816-isoform d | 1.306045 | 0.208671 | 1.382103 |
| cg10576-isoform a | −1.62996 | 0.609209 | −0.82538 |
| tollo cg6890-pa | −1.07589 | 0.613 | −0.52011 |
| smooth muscle | −0.15391 | 0.992315 | −1.22664 |
| ---NA--- | 0.055575 | 1.134956 | 0.073985 |
| ---NA--- | −0.02831 | 1.343717 | 0.004151 |
| ---NA--- | 0.29424 | 1.396849 | 0.19818 |
| ---NA--- | 0.433958 | 1.517664 | 0.468252 |
| ---NA--- | 0.421735 | 1.593478 | 0.320868 |
| ---NA--- | 0.313366 | 1.776955 | 0.436652 |
| ---NA--- | −0.01622 | 1.781616 | 0.37655 |
| pupal cuticle | −0.11425 | 2.05139 | 0.16826 |
| retinoid- and fatty-acid binding protein cg11064-pa isoform 1 | 0.637634 | 2.181204 | 0.327091 |
| ---NA--- | 1.019918 | 2.189003 | 0.530595 |
| golgi transport 1 homolog b | −0.13215 | 2.32078 | −0.23713 |
| cytochrome p450 | 3.899183 | 2.329793 | 4.20731 |
| pupal cuticle | 0.031307 | 2.484786 | −0.04927 |
| transcriptional regulator | 0.617591 | 2.505465 | 1.265079 |
| dicarbonyl l-xylulose reductase | 0.654662 | 2.569478 | 0.292406 |
| dopachrome conversion enzyme | 1.43119 | 2.666762 | 1.648458 |
| cuticle protein | 0.532201 | 2.707232 | 0.018046 |
| cg15527 | 1.603184 | 2.802856 | 1.588836 |
| gasp precursor | 1.429647 | 2.944655 | 1.202601 |
| ---NA--- | 0.008141 | 3.119834 | −0.24211 |
| cuticular protein 17 from low complexity family (agap006149-pa) | 0.849878 | 3.175253 | 1.237865 |
| ---NA--- | 1.420134 | 3.286538 | 1.896568 |
| ---NA--- | −0.09458 | 3.302558 | −0.26646 |
| ---NA--- | 1.076751 | 3.33122 | 0.29308 |
| male doublesex | 2.087831 | 3.378044 | 1.742706 |
| cg16885-isoform a | 2.342864 | 3.453355 | 1.745159 |
| collagen adhesin protein | 0.652254 | 3.526428 | 1.333105 |
| cuticular protein 17 from low complexity family (agap006149-pa) | 1.278416 | 3.564511 | 1.6851 |
| fk506-binding protein | 1.348947 | 3.638417 | 1.577823 |
| cuticular proteinrr-2 family (agap001668-pa) | 1.386482 | 3.799004 | 1.139587 |
| cuticular protein | 2.096998 | 3.855633 | 2.768874 |
| cuticle | 2.88288 | 3.921788 | 2.629512 |
| ---NA--- | −0.49092 | 3.938912 | −0.13293 |
| three prime repair exonuclease | 1.652532 | 3.962492 | 1.983267 |
| chromosome 1 open reading frame 151 protein | 1.40921 | 4.182193 | 1.924277 |
| cuticular proteinrr-2 family (agap001668-pa) | 1.791403 | 4.533675 | 1.469891 |
| cuticle | 3.104258 | 4.573813 | 3.216351 |
| cuticular proteinrr-2 family (agap010095-pa) | 1.880374 | 4.60833 | 1.604438 |
| cuticle | 3.124514 | 4.616544 | 3.180159 |
| cuticle | 2.979066 | 4.70642 | 2.795767 |
| cuticular proteinrr-2 family (agap001668-pa) | 1.841373 | 4.717938 | 1.726234 |
| cuticular proteinrr-2 family (agap001668-pa) | 1.760505 | 4.744734 | 1.418281 |
| major intrinsic protein of eye lens fiber | 3.72832 | 5.456043 | 4.260327 |
| cuticle | 3.133595 | 5.498162 | 4.136754 |
| cuticle | 3.476786 | 5.506462 | 2.983314 |
| cuticular proteinrr-2 family (agap003390-pa) | 3.90834 | 5.740922 | 4.431792 |