Appendix 4. Genes of the developing thoracic epidermis of O. nigriventris with the most divergent expression patterns between morphs and sexes.
Genes were filtered as follows: 1) genes were significantly differentially expressed in the thoracic epidermis relative to the abdomen (M > 0) or in the abdomen relative to the thorax (M < 0) in at least one treatment category; 2) absolute difference in expression (M value) was greater than 0.75 when horned males were compared to both females and sneaker males. Shown are M values for genes fitting these criteria in thoracic epidermis-abdomen arrays for tissue from females, horned males and sneaker males. Gene annotation is according to (Kijimoto et al. 2009).
| Gene | Female | Horned | Sneaker |
|---|---|---|---|
| myofilin protein | −3.36636 | −4.28976 | −3.52464 |
| leucine rich repeat containing 20 | −2.82641 | −3.95324 | −3.14418 |
| cg5939-isoform a | −2.20127 | −3.50905 | −2.13895 |
| cg33205-isoform f | −2.43331 | −3.49714 | −2.32824 |
| cg5939-isoform a | −2.44679 | −3.48479 | −2.34693 |
| cg5939-isoform a | −2.33613 | −3.3169 | −2.10347 |
| paramyosin | −2.43609 | −3.25782 | −2.00963 |
| muscular protein 20 | −1.84373 | −2.97949 | −1.89135 |
| myosin light chain | −1.89345 | −2.97087 | −2.21614 |
| myosin heavynonmuscle or smooth muscle | −1.74439 | −2.4968 | −1.52148 |
| muscle lim protein | −1.4099 | −2.47528 | −1.33804 |
| muscle lim protein | −0.84231 | −1.98286 | −1.02165 |
| ---NA--- | −0.632 | −1.87506 | −0.71674 |
| troponin i | −1.03083 | −1.86206 | −0.9607 |
| f-box leucine rich repeat protein | 0.290666 | −1.80495 | −0.93902 |
| slc39a9 protein | −0.81465 | −1.58076 | −0.53927 |
| 205 kda microtubule-associated protein | 0.608656 | −0.25735 | 0.56965 |
| cg2867 | 0.847172 | −0.22563 | 0.782536 |
| translocase of inner mitochondrial membrane 23 homolog | 3.332519 | 1.213426 | 2.200428 |
| obstractor b | 0.30255 | 1.237716 | 0.096169 |
| ---NA--- | 0.45308 | 1.440766 | −0.16057 |
| calcium calmodulin-dependent protein kinase kinase | 0.490072 | 1.621284 | 0.662207 |
| pnuts protein | 0.606768 | 1.699443 | 0.675363 |
| receptor tyrosine phosphatase type r2a | 1.112783 | 1.973167 | 0.9052 |
| cuticular proteinrr-2 family (agap010095-pa) | 1.208615 | 2.002869 | 1.048826 |
| smooth muscle | 3.673561 | 2.137674 | 3.510956 |
| ---NA--- | 1.201252 | 2.378341 | 1.442603 |
| splicing factorsubunit 4 | 1.132123 | 2.37955 | 1.121552 |
| ---NA--- | 1.125744 | 2.429575 | 1.399506 |
| cg15920-isoform a | 4.215076 | 2.45339 | 3.798524 |
| ---NA--- | 1.194697 | 2.576861 | 1.281907 |
| ---NA--- | 1.163802 | 2.661204 | 1.335176 |
| ---NA--- | 1.635242 | 2.708232 | 1.342403 |
| male doublesex | 0.953268 | 3.289013 | 1.081923 |
| cuticular proteinrr-3 family (agap006931-pa) | 2.115994 | 3.49637 | 2.236123 |
| cuticle | 2.428872 | 3.518445 | 2.646961 |
| ---NA--- | 1.936041 | 3.644659 | 2.425459 |