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. Author manuscript; available in PMC: 2012 Jan 2.
Published in final edited form as: DNA Repair (Amst). 2010 Oct 16;10(1):56–64. doi: 10.1016/j.dnarep.2010.09.007

Table 2.

Extension from Gua:Cyt, Gua:Thy and N2-ethyl-Gua:Cyt, N2-ethyl-Gua:Thy base pairs by DNA pol κa

Metal ion Base pair Km (μM) kcat (min−1) kcat/Km (min−1 μM−1) relative extension frequencyb
At Template N2 -ethyl-Gua
0.075mM Mn2+
N2etGua:Cyt 1500 ± 1200 430 ± 250 2.8 × 10−1 1
N2etGua:Thy 100 ± 20 20 ± 1 2.0 × 10−1 1/1.4
2mM Mg2+
N2etGua:Cyt 90 ± 60 390 ± 110 4.3 1
N2etGua:Thy 12 ± 2 40 ± 0.7 3.3 1/1.3

At Template Gua
0.075mM Mn2+
Gua:Cyt 630 ± 300 200 ± 60 3.2 × 10−1 1
Gua:Thy 70 ± 20 30 ± 2 4.3 × 10−1 1/0.7
2mM Mg2+
Gua:Cyt 50 ± 30 530 ± 130 11 1
Gua:Thy 6.9 ± 1.3 60 ± 2 8.7 1/1.2
a

Km and kcat values were determined by quantifying gel band intensities using ImageQuant software and non-linear regression analysis of product vs [dNTP] curves using SigmaPlot 8.0.2.

b

Relative extension frequency was calculated as 1/([kcat/Km]correct/[kcat/Km]incorrect).