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. 2010 Dec 9;107(52):22528–22533. doi: 10.1073/pnas.1015356107

Table 3.

Conformational preferences of Asn and glyco-Asn residues at the (experimentally introduced) glycosylation sites in heptapeptide sequences, depicted as percent of conformers in α-helix, β-sheet, or turn/αL conformations (see SI Text for definitions)

Pseudo-WT Glycosylated pseudo-WT
α-Helix β-Sheet Turn/αL
α-Helix β-Sheet Turn/αL
N5 0.87 ± 0.03 0.06 ± 0.01 0.07 ± 0.02 0.66 ± 0.05 0.19 ± 0.03 0.14 ± 0.04
A13N 0.39 ± 0.03 0.06 ± 0.02 0.55 ± 0.01 0.34 ± 0.08 0.43 ± 0.07 0.19 ± 0.08
K20N 0.84 ± 0.05 0.07 ± 0.02 0.09 ± 0.05 0.59 ± 0.07 0.20 ± 0.04 0.19 ± 0.04
V27N 0.69 ± 0.04 0.07 ± 0.02 0.24 ± 0.02 0.43 ± 0.05 0.32 ± 0.03 0.23 ± 0.06
N60 0.88 ± 0.02 0.05 ± 0.01 0.07 ± 0.02 0.90 ± 0.02 0.06 ± 0.01 0.03 ± 0.02
K73N 0.81 ± 0.03 0.11 ± 0.03 0.08 ± 0.05 0.34 ± 0.04 0.64 ± 0.04 0.00 ± 0.00
A78N 0.90 ± 0.04 0.04 ± 0.01 0.06 ± 0.03 0.69 ± 0.05 0.25 ± 0.03 0.05 ± 0.02

Structures with dihedral angles not in one of these categories comprised < 0–4% of the conformational ensembles. The data were obtained from a backbone dihedral angle analysis of structures generated using REMD simulations of Im7 heptapeptide subsequences.