Table 2.
Result of meta-analysis for selected SNPs
Chr | SNPs | Position | m/M alleles |
Risk allele |
Fixed effect |
Random effect |
Heterogeneity |
Genetic variation |
|||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
OR | 95% CI | OR | 95% CI | P-valofZ | P-valofQ | I2 | Freq | Proportion | |||||
2 | rs1465618 | 43,407,453 | A/G | A | 1.11 | 1.07 – 1.16 | 1.15 | 1.04 – 1.26 | 4.92E-03 | 8.66E-03 | 79% | 0.212 | 0.003 |
2 | rs721048 | 62,985,235 | A/G | A | 1.16 | 1.11 – 1.22 | 1.18 | 1.10 – 1.28 | 1.22E-05 | 0.084 | 44% | 0.137 | 0.002 |
2 | rs12621278 | 173,019,799 | A/G | A | 1.35 | 1.27 – 1.44 | 1.35 | 1.27 – 1.44 | 3.36E-19 | 0.576 | 0% | 0.960 | 0.003 |
3 | rs2660753 | 87,193,364 | T/C | T | 1.22 | 1.14 – 1.31 | 1.24 | 1.04 – 1.48 | 0.015 | 3.87E-04 | 84% | 0.102 | 0.003 |
3 | rs10934853 | 129,521,063 | A/C | A | 1.12 | 1.08 – 1.16 | 1.12 | 1.06 – 1.18 | 7.43E-05 | 0.016 | 53% | 0.239 | 0.002 |
4 | rs17021918 | 95,781,900 | T/C | C | 1.14 | 1.10 – 1.18 | 1.14 | 1.10 – 1.18 | 1.54E-15 | 0.473 | 0% | 0.646 | 0.003 |
4 | rs7679673 | 106,280,983 | A/C | C | 1.13 | 1.10 – 1.17 | 1.14 | 1.09 – 1.20 | 1.29E-07 | 0.153 | 47% | 0.624 | 0.003 |
6 | rs9364554 | 160,753,654 | T/C | T | 1.16 | 1.10 – 1.21 | 1.17 | 1.06 – 1.29 | 1.91E-03 | 5.96E-03 | 76% | 0.274 | 0.004 |
7 | rs6465657 | 97,654,263 | T/C | C | 1.13 | 1.08 – 1.18 | 1.14 | 1.05 – 1.23 | 1.42 E-03 | 0.031 | 66% | 0.509 | 0.003 |
8 | rs2928679 | 23,494,920 | A/G | A | 1.09 | 1.06 – 1.12 | 1.13 | 1.02 – 1.25 | 0.017 | 3.89E-04 | 87% | 0.456 | 0.003 |
8 | rs1512268 | 23,582,408 | T/C | T | 1.17 | 1.14 – 1.21 | 1.17 | 1.12 – 1.23 | 1.56E-12 | 0.205 | 37% | 0.420 | 0.005 |
8 | rs10086908 | 128,081,119 | C/T | T | 1.13 | 1.09 – 1.18 | 1.13 | 1.08 – 1.19 | 6.25E-07 | 0.243 | 23% | 0.625 | 0.003 |
8 | rs16901979 | 128,194,098 | A/C | A | 1.80 | 1.57 – 2.06 | 1.82 | 1.44 – 2.30 | 6.32E-07 | 0.163 | 41% | 0.031 | 0.009 |
8 | rs16902094 | 128,389,528 | G/A | G | 1.21 | 1.16 – 1.27 | 1.20 | 1.12 – 1.30 | 1.12E-06 | 0.015 | 54% | 0.271 | 0.005 |
8 | rs620861 | 128,404,855 | A/G | G | 1.16 | 1.11 – 1.20 | 1.16 | 1.11 – 1.20 | 1.18E-13 | 0.618 | 0% | 0.619 | 0.004 |
8 | rs6983267 | 128,482,487 | G/T | G | 1.20 | 1.14 – 1.26 | 1.20 | 1.14 – 1.26 | 8.13E-12 | 0.758 | 0% | 0.487 | 0.006 |
8 | rs1447295 | 128,554,220 | A/C | A | 1.49 | 1.40 – 1.57 | 1.47 | 1.33 – 1.62 | 3.82E-14 | 0.013 | 57% | 0.071 | 0.008 |
10 | rs10993994 | 51,219,502 | T/C | T | 1.26 | 1.22 – 1.31 | 1.25 | 1.12 – 1.40 | 6.80E-05 | 1.22E-15 | 91% | 0.341 | 0.009 |
10 | rs4962416 | 126,686,862 | C/T | C | 1.14 | 1.09 – 1.20 | 1.15 | 1.04 – 1.27 | 7.85 E-03 | 1.79E-04 | 80% | 0.257 | 0.003 |
11 | rs7127900 | 2,190,150 | G/A | A | 1.25 | 1.20 – 1.30 | 1.25 | 1.20 – 1.30 | <1.00E-30 | 0.713 | 0% | 0.235 | 0.007 |
11 | rs10896449 | 68,751,243 | A/G | G | 1.16 | 1.11 – 1.22 | 1.16 | 1.11 – 1.22 | 8.67E-10 | 0.898 | 0% | 0.532 | 0.004 |
17 | rs11649743 | 33,149,092 | A/G | G | 1.16 | 1.11 – 1.22 | 1.16 | 1.11 – 1.22 | 1.19E-09 | 0.922 | 0% | 0.757 | 0.003 |
17 | rs4430796 | 33,172,153 | A/G | A | 1.22 | 1.17 – 1.26 | 1.22 | 1.17 – 1.26 | 1.13E-25 | 0.645 | 0% | 0.491 | 0.008 |
17 | rs1859962 | 66,620,348 | G/T | G | 1.20 | 1.13 – 1.27 | 1.21 | 1.12 – 1.30 | 7.94E-07 | 0.214 | 33% | 0.527 | 0.007 |
19 | rs8102476 | 43,427,453 | T/C | C | 1.12 | 1.08 – 1.15 | 1.12 | 1.08 – 1.15 | 2.27E-12 | 0.729 | 0% | 0.504 | 0.002 |
19 | rs887391 | 46,677,464 | C/T | T | 1.14 | 1.08 – 1.20 | 1.14 | 1.08 – 1.20 | 6.86E-07 | 0.826 | 0% | 0.757 | 0.003 |
19 | rs2735839 | 56,056,435 | A/G | G | 1.30 | 1.22 – 1.39 | 1.30 | 1.11 – 1.51 | 7.47E-04 | 6.37E-04 | 83% | 0.863 | 0.006 |
22 | rs9623117 | 38,782,065 | C/T | C | 1.12 | 1.07 – 1.17 | 1.13 | 1.05 – 1.22 | 1.22E-03 | 0.019 | 58% | 0.221 | 0.002 |
22 | rs5759167 | 41,830,156 | T/G | G | 1.18 | 1.14 – 1.21 | 1.18 | 1.14 – 1.21 | 1.44E-27 | 0.682 | 0% | 0.549 | 0.005 |
23 | rs5945619 | 51,258,412 | C/T | C | 1.26 | 1.18 – 1.34 | 1.27 | 1.12 – 1.43 | 2.05E-04 | 0.012 | 73% | 0.385 | 0.005 |
m = minor allele, M = major allele; OR and 95% CI were calculated in terms of risk allele; and Freq is the risk allele freq in HapMap.