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. 2010 Nov 4;39(Database issue):D80–D85. doi: 10.1093/nar/gkq1073

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© The Author(s) 2010. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — ‘Predicted proteins’ panel for gene CSMD3 (CUB and Sushi multiple domains 3). The gene is predicted to encode for 12 transcripts and 7 different protein sequences. Variants labeled as PR1, PR2 and PR3 are identical to the isoforms reported in the CSMD3_HUMAN entry of SwissProt/UniprotKB. Two more variants are reported in that file, although lacking of experimental annotations. Several repetitions of Sushi and CUB domains are predicted with PFAM (25) and represented with symbols indicating whether the model is completely or partially mapped to the sequence. The two transmembrane helices are predicted with ENSEMBLE (35).