Table 1.
Annotation updates for agricultural arrays
| Platform ID | Array name | Submitted | Last update |
|---|---|---|---|
| Chicken | |||
| GPL3213 | Affymetrix Chicken Genome Array | November 2005 | June 2009 |
| GPL5480 | ARK-Genomics G. gallus 20K v1.0 | July 2007 | July 2007 |
| GPL1731 | DEL-MAR 14K Integrated Systems | December 2004 | March 2006 |
| Bovine | |||
| GPL2853 | UIUC Bos taurus 13.2K 70-mer oligoarray | September 2005 | March 2007 |
| GPL2864 | UIUC Cattle 7,872-element cDNA - alternate version | September 2005 | March 2007 |
| GPL2112 | Affymetrix Bovine Genome Array | May 2005 | June 2009 |
| Pig | |||
| GPL7435 | Swine Protein-Annotated Oligonucleotide Microarray | October 2008 | November 2008 |
| GPL3608 | DIAS_PIG_55K3_v1 | March 2006 | May 2009 |
| GPL1881 | Qiagen-NRSP-8 porcine oligo array | February 2005 | May 2005 |
| Horse | |||
| GPL10248 | Agilent 4x44k Horse Gene Expression microarrays | March 2010 | March 2010 |
| GPL8582 | MacLeod custom equine cartilage 10K cDNA microarray version 3 | May 2009 | October 2009 |
| Maize | |||
| GPL4032 | Affymetrix Maize Genome Array | July 2006 | June 2009 |
| GPL3538 | SAM3.0 | March 2006 | November 2006 |
| GPL3333 | SAM1.1a | January 2006 | March 2006 |
| GPL1996 | Maize cDNA Generation II Version B | April 2005 | May 2005 |
| Rice | |||
| GPL1829 | Rice Genome Oligo Set V1.0 | January 2005 | October 2008 |
| GPL892 | Agilent-012106 Rice Oligo Microarray G4138A | January 2004 | September 2008 |
| GPL8161 | NSF Rice Oligonucleotide Array 45K One Chip Version | February 2009 | February 2009 |
| Soybean | |||
| GPL3015 | Keck Glycine max 18kA cDNA Prints101-108 | October 2005 | October 2005 |
| GPL1012 | Gm-r1088 | February 2004 | May 2005 |
| GPL229 | Gm-r1070 | December 2002 | October 2005 |
| Tomato | |||
| GPL9923 | CombiMatrix 90K TomatArray 1.0 | January 2010 | August 2010 |
| GPL4741 | Affymetrix Tomato Genome Array | January 2007 | June 2009 |
| GPL3034 | Cornell-CGEP Tomato 13K vTOM1 | October 2005 | November 2005 |
Arrays for agricultural species with the greatest numbers of data sets submitted to the NCBI GEO database (as at 9 September 2010) are shown, along with information about when the array platform data was submitted and its last update. Updates typically include ID mapping; updated functional information for transcripts represented on arrays is not always included and is harder to assess collectively.