Table 1.

A listing of the whole genomes available in Gramene

Oryza sativa japonica	Updated to MSU version 6 released in January 2009 (33) with 160 000 SNPs from 20 O. sativa lines determined as part of the OryzaSNP project using SNP array technology (34)
Oryza sativa indica	The Beijing Genome Institute (BGI) assembly of cultivar 93-11 published in 2005 (35)
Arabidopsis thaliana	Updated to The Arabidopsis Information Resource (TAIR) (36) version 9 released in June 2009 with the Ensembl database created by the Nottingham Arabidopsis Stock Centre (NASC)
	637 522 SNPs from 20 A. thaliana lines determined as part of the Arabidopsis 2010 project using genome tiling array technology
	220 000 SNPs from 363 A. thaliana lines determined as part of the Arabidopsis 2010 project using SNP array technology
	2 698 797 SNPs from 17 A. thaliana lines determined as part of the Arabidopsis 1001 genomes project using re-sequencing technology
Arabidopsis lyrata	Added the Araly1 assembly from the Joint Genomes Institute (JGI)
Brachypodium distachyon	Added the Brachy 1.2 version from JGI (2010)
Populus trichocarpa	Added JGI version 2.0 assembly (January 2010) and JGI version 2.0 gene predictions (March 2010) (37)
Sorghum bicolor	Added the Sbi1 assembly and Sbi1.4 gene set (March 2007) (38)
Vitis vinifera	Added the International Grape Genome Program (IGGP) and version ‘IGGP 12X’ (39) with 469 470 SNPs from 17 V. vinifera lines determined as part of the USDA project using re-sequencing technology (40)