Table 1.
A listing of the whole genomes available in Gramene
Oryza sativa japonica | Updated to MSU version 6 released in January 2009 (33) with 160 000 SNPs from 20 O. sativa lines determined as part of the OryzaSNP project using SNP array technology (34) |
Oryza sativa indica | The Beijing Genome Institute (BGI) assembly of cultivar 93-11 published in 2005 (35) |
Arabidopsis thaliana | Updated to The Arabidopsis Information Resource (TAIR) (36) version 9 released in June 2009 with the Ensembl database created by the Nottingham Arabidopsis Stock Centre (NASC) |
637 522 SNPs from 20 A. thaliana lines determined as part of the Arabidopsis 2010 project using genome tiling array technology | |
220 000 SNPs from 363 A. thaliana lines determined as part of the Arabidopsis 2010 project using SNP array technology | |
2 698 797 SNPs from 17 A. thaliana lines determined as part of the Arabidopsis 1001 genomes project using re-sequencing technology | |
Arabidopsis lyrata | Added the Araly1 assembly from the Joint Genomes Institute (JGI) |
Brachypodium distachyon | Added the Brachy 1.2 version from JGI (2010) |
Populus trichocarpa | Added JGI version 2.0 assembly (January 2010) and JGI version 2.0 gene predictions (March 2010) (37) |
Sorghum bicolor | Added the Sbi1 assembly and Sbi1.4 gene set (March 2007) (38) |
Vitis vinifera | Added the International Grape Genome Program (IGGP) and version ‘IGGP 12X’ (39) with 469 470 SNPs from 17 V. vinifera lines determined as part of the USDA project using re-sequencing technology (40) |