Table 3.

Large-scale variation-based genotype data sets available in Gramene’s genetic diversity database

Rice	OryzaSNP large scale SNP variation study (41) (∼160 K SNPs × 20 diversity rice accessions), mapped from IRGSP4 to MSU6
Maize	Panzea SNP data (1.6MSNPs × 27 NAM founder lines)
Arabidopsis	2010 Project SNP discovery (42) (637 522 SNPs, 20 accessions), mapped from TAIR8 to TAIR9
	2010 Project genotype data v3.04 (∼214K SNPs × 1179 Arabidopsis accessions), mapped from TAIR8 to TAIR9. Construction of 250K chip used in this study is discussed in Clark (42) and Kim (43)
	1001 Genomes WTCHG/Mott data from dbSNP (2 698 797 SNPs, 17 accessions)