. 2010 Dec 2;3:1–14. doi: 10.1093/gbe/evq080

Table 2.

Characteristics and Nomenclature of DNA Transposons in the Lizard Anolis carolinensis.

Superfamily	Name	Copy Number >90% Identity	Length in base pair	TSD	Length of TIR	TIR	% Divergence ± SE	% Divergence from Consensus ± SE
Helitron	Helitron-1_AC	<5	8,771	TA	—	—	5.72 ± 0.35	3.04 ± 0.19
	Helitron-1N1_AC	84	1,436	TA	—	—	1.90 ± 0.25	1.02 ± 0.14
	Helitron-2_AC	<5	4,982	TA	—	—	3.66 ± 0.87	1.95 ± 0.40
	Helitron-2N1_AC	66	1,290	TA	—	—	19.4 ± 0.96	11.3 ± 0.66
	Helitron-2N2_AC	608	1,930	TA	—	—	2.69 ± 0.34	1.58 ± 0.27
	Helitron-2N3_AC	>1,000	2,000	TA	—	—	1.98 ± 0.29	0.85 ± 0.10
	Helitron-2N4_AC	860	550	TA	—	—	2.96 ± 0.32	2.55 ± 0.30
	Helitron-2N5_AC	>1,000	2,000	TA	—	—	1.91 ± 0.36	1.78 ± 0.35
TcMar	Tc-1_AC	58	1,306	TA	39	HGADGGGGCGTTCATTAAAG^a	13.0 ± 0.62	7.73 ± 0.38
	TcMar-N1_AC	901	489	TA	203	CGAGGGCTATCCAGAAAGTA^a	7.62 ± 0.55	4.39 ± 0.43
	TcMar-N2_AC	>1,000	783	TA	40	CGAGGGTTGAATGAAAAGTA^a	6.93 ± 0.44	3.87 ± 0.27
	TcMar-N3_AC	>1,000	427	TA	24	CCSTGTTTCCCCGAAAATAA^a	3.04 ± 0.41	1.45 ± 0.19
	TcMar-N4_AC	>1,000	661	TA	25	CYGTATATACTCGAGTATAA^a	4.32 ± 0.27	2.32 ± 0.18
	TcMar-N5_AC	604	1,396	TA	23	CCSTGTTTCCCCGAAAATAA^a	1.42 ± 0.12	0.79 ± 0.08
	TcMar-N6_AC	889	405	TA	23	CCGTATATACTCGAGTATAA^a	11.1 ± 0.90	6.62 ± 0.57
	TcMar-N7_AC	>5,000	323	TA	24	CAGTAGAGTCTCACTTATCC^a	2.91 ± 0.52	1.52 ± 0.38
	TcMar-N8_AC	>1,000	468	TA	25	CAGTAGAGTCTCACTTATCC^a	8.39 ± 0.66	4.83 ± 0.41
	TcMar-N9_AC	105	339	TA	15	CAGTGYYCCCTCRCT	8.65 ± 0.91	5.54 ± 0.57
	TcMar-N10_AC	287	664	TA	311	CGAGGGCTATCCAGAAAGTT^a	7.14 ± 0.55	5.18 ± 0.53
	TcMar-N11_AC	348	401	TA	15	CAGTGTTCCCTCRCT	10.1 ± 0.74	5.18 ± 0.53
	TcMar-N12_AC	952	321	TA	20	GAGTCTCRCTTATCCAACMT	10.5 ± 0.87	5.74 ± 0.57
	TcMar-N13_AC	36	168	TA	22	CYGTATTTCTTCAATTSTAA	22.6 ± 1.90	10.5 ± 0.88
	TcMar-N14_AC	14	240	TA	31	GATTGTAGCTACAGTATGAC^a	27.3 ± 2.74	15.2 ± 1.67
	TcMar-N15_AC	498	524	TA	18	CASRKGTGTCAAACTCAA	23.1 ± 1.24	12.4 ± 0.76
	TcMar-N16_AC	3,771	350	TA	15	CAGTGTTCCCTCACT	3.02 ± 0.34	1.62 ± 0.19
	TcMar-N17_AC	137	356	TA	26	CAGGTTGAGYATCCCTTATC^a	31.6 ± 1.61	17.1 ± 1.21
Chapaev	Chapaev3-1_AC	15	1910	TWA	12	CACTGRWAAACA	18.1 ± 0.99	12.3 ± 1.10
	Chapaev3-2_AC	4	1,767	TWA	18	CACTAGGAAACACAATTT	19.7 ± 1.46	10.9 ± 0.90
	Chapaev3-1N1_AC	46	390	TWA	11	CACWGSCCAAC	28.0 ± 2.39	15.9 ± 0.92
	Chapaev3-1N2_AC	988	320	TWA	19	CACTATGTAACAAAATTT	12.5 ± 0.77	6.00 ± 0.42

SE, standard error.

Only the first 20 bp of the TIR are presented here.