Table 2.

Loci Previously Identified by GWAS that Failed to Replicate at Array-wide Significance in Phase III

Chr.	Candidate Gene	Previous Lead SNP	Lead SNP on IBC Array	r2 between Previous and Lead SNP on IBC Array	European Ancestry Phase III (up to 90,446) p	In Lango Allen et al. (2010)5
4q12	PDGFRA	rs17690232	rs7660759	0.07	6.3 × 10−3
8q13	LYN	rs10958476	rs13249338	0.12	2.2 × 10−3
9q33	PAPPA	rs789550	rs7020782	0.58	9.2 × 10−6	Yes
12q23	IGF1	rs5742692	rs1019731	0.001	7.1 × 10−4
14q32	FBLN5	rs7153027	rs3783937	0.52	3.1 × 10−4
17q22	NOG	rs4794665	rs1076352	0.06	0.03	Yes
20p12	BMP2	rs967417	rs6107869	0.06	0.05	Yes