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. Author manuscript; available in PMC: 2012 Jan 15.
Published in final edited form as: Gen Comp Endocrinol. 2010 Oct 20;170(2):334–345. doi: 10.1016/j.ygcen.2010.10.010

Table 1.

Oligonucleotide sequences used to generate ISH RNA probes and in quantitative (qRT-PCR) and semi-quantitative RT-PCR (sqRT-PCR). For added specificity, at least one of the pck1 and pck2 oligonucleotides were anchored in either the 5′ or 3′ untranslated region (UTR). In pck1 Forward, 10 of 21 total nucleotides (underscored) are unique to pck1. In pck1 Reverse, 14 of 20 total (underscored) are unique to pck1. The pck1 primers were used in PCR and to generate gene-specific, digoxigenin-labeled RNA probes for in situ hybridization.

Gene Forward Reverse
pck 1 5′TCTCCATCCCTCCGCTCATCA3′ (5′URT) 5′ GGCCCAGCTGACTGCTCCT3′ (Exon 2)
pck2 5′ CAAACACTGGCATCTGCAT3′ (3′URT) 5′ TGGCCAGCTCAGGTA3′ (3′ UTR)
insa 5′GTTGGTCGTGTCCAGTGTAAGCACTAA3′ 5′CCACCTCAGTTTCCTGGGCAGATTTA3′
insa 5′TCTCTGCCTGGATCGCAGTCTTCT3′ 5′GGATCCGCATCTGCTGCCTCATAA3′
β actin 5′CCCCTCCATTGTTGGACGAC3′ 5′TAGCCACGCTCGGTCAGGAT3′
insRa 5′CATAACCTGATGCAGATGTGCTGGCAT3′ 5′TGCGTGTACGGCACATGCTCCTCAT3′
insRb 5′TTGCCGAGCCAGTGACTCACGAA3′ 5′ACCAGTAAGAAAATGCAGATGGCTA3′